MXO02043.3prime Sequence
675 bp (570 high quality bases) assembled on 2007-01-18
> MXO02043.3prime
ATGGTCTAGAAAGCTTGCGGAGTCACGTTGGTAGATTTTGTTGAGTATTT
GCAGGAAGGTCTGGTGAGGCACCCCGCGTGAGGTTTGTTGTATGTGCGTT
TTAATCATGTTGTAGGATTCCTCCTCGAAAATGGCATAGGTGGATGGCAG
TCCAAGTTCCTTGTACAGTTCTTTCACTCTCTCCACTTTAGCTGGTTCTT
CTTTGCCATAGCAATCGACCATGATTTGCTTTTGCTCGACATTGGCTCGC
TGCATAGCCACCACAGCCAGCCACGAGCACTTGTTGTCCTGAATGTCGGT
TCCAATTTTACCAGTCACTTCCGGATTACCGAAGCAGTCGAGAAAATCAT
CTTGAACCTGGAAAAAGTTGCCCATTTCTAGGAGAATGGTCTTCGATTGA
CGGAAGGCCTCTGCGTCTTTATAGCCAGCCAAGTGCAAAGCAAGTGCGAA
TGGAAGGTAGAAGGAGTAATAGGCAGTCTTATTTTCGACAATTGCTTTGT
AGTTTTCCATTGTGAATTCCGAGACACAGCGGTTCGAGTTCAGTTGGTCC
AACGATTGTCCGCAGGTAGTGATGTTGGATTCTGAAACTCCTTAGCACTA
CATCCATGTGATGCTCTGAATGCTACTGCTTTCATCTAGACTCTTATGCA
TCAGCCCTCTCACTGTGCACAGTGC
MXO02043.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG12389-PA | 1260 | Fpps-RA | 701..1257 | 575..19 | 2685 | 99.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1465 | CG12389-RA | 787..1343 | 575..19 | 2725 | 99.3 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11305872..11306099 | 198..425 | 1095 | 98.7 | Plus |
2R | 25286936 | 2R | 11305633..11305813 | 19..199 | 890 | 99.4 | Plus |
2R | 25286936 | 2R | 11306159..11306309 | 425..575 | 755 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:30:55 has no hits.
MXO02043.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:44 Download gff for
MXO02043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12389-PA | 685..1260 | 15..587 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:26 Download gff for
MXO02043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 771..1349 | 11..587 | 97 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:58 Download gff for
MXO02043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 771..1349 | 11..587 | 97 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:58 Download gff for
MXO02043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11305627..11305811 | 11..197 | 97 | <- | Plus |
2R | 11305872..11306098 | 198..424 | 98 | <- | Plus |
2R | 11306159..11306309 | 425..575 | 100 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:26 Download gff for
MXO02043.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7193132..7193316 | 11..197 | 97 | <- | Plus |
arm_2R | 7193377..7193603 | 198..424 | 98 | <- | Plus |
arm_2R | 7193664..7193814 | 425..575 | 100 | == | Plus |
MXO02043.5prime Sequence
881 bp (795 high quality bases) assembled on 2007-04-04
> MXO02043.5prime
CAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGCAGCGGATC
CTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGCGACGAGGT
CAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGGCCTCCCCA
CCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAACCTTATCG
ACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACGGTGTCGAA
AGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGTGCGTGACA
TCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCAAATGGTTC
GCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAACCGCGGCAT
CCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGATCTTACGC
CGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGGAAATGCTC
CAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGCACCACCAG
ACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCTGACTGCCA
TTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTCTCAAGAAG
CACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTCTTCCACGA
AATCACATACATCACTACCTGCGGACAATCGTTGGACCAACTGAACTCGA
ACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAATTGTCGAT
AATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTTGCTTTGCA
CTTGGCTGGCTATAAAGACGCAGAGGCCTTC
MXO02043.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Fpps-RA | 1465 | CG12389-RA | 87..959 | 9..881 | 4335 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 11306159..11306521 | 859..497 | 1800 | 99.7 | Minus |
2R | 25286936 | 2R | 11306580..11306794 | 497..283 | 1060 | 99.5 | Minus |
2R | 25286936 | 2R | 11307261..11307442 | 190..9 | 910 | 100 | Minus |
2R | 25286936 | 2R | 11306865..11306962 | 285..188 | 490 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:14:17 has no hits.
MXO02043.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:19 Download gff for
MXO02043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 87..959 | 9..881 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:51 Download gff for
MXO02043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Fpps-RA | 87..959 | 9..881 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:51 Download gff for
MXO02043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 11306077..11306098 | 860..881 | 100 | <- | Minus |
2R | 11306159..11306520 | 498..859 | 99 | <- | Minus |
2R | 11306580..11306791 | 286..497 | 99 | <- | Minus |
2R | 11306865..11306959 | 191..285 | 100 | <- | Minus |
2R | 11307261..11307442 | 9..190 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:19 Download gff for
MXO02043.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 7194085..7194296 | 286..497 | 99 | <- | Minus |
arm_2R | 7194370..7194464 | 191..285 | 100 | <- | Minus |
arm_2R | 7194766..7194947 | 9..190 | 100 | | Minus |
arm_2R | 7193582..7193603 | 860..881 | 100 | <- | Minus |
arm_2R | 7193664..7194025 | 498..859 | 99 | <- | Minus |