Clone MXO02043 Report

Search the DGRC for MXO02043

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:43
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptFpps-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02043.3prime Sequence

675 bp (570 high quality bases) assembled on 2007-01-18

> MXO02043.3prime
ATGGTCTAGAAAGCTTGCGGAGTCACGTTGGTAGATTTTGTTGAGTATTT
GCAGGAAGGTCTGGTGAGGCACCCCGCGTGAGGTTTGTTGTATGTGCGTT
TTAATCATGTTGTAGGATTCCTCCTCGAAAATGGCATAGGTGGATGGCAG
TCCAAGTTCCTTGTACAGTTCTTTCACTCTCTCCACTTTAGCTGGTTCTT
CTTTGCCATAGCAATCGACCATGATTTGCTTTTGCTCGACATTGGCTCGC
TGCATAGCCACCACAGCCAGCCACGAGCACTTGTTGTCCTGAATGTCGGT
TCCAATTTTACCAGTCACTTCCGGATTACCGAAGCAGTCGAGAAAATCAT
CTTGAACCTGGAAAAAGTTGCCCATTTCTAGGAGAATGGTCTTCGATTGA
CGGAAGGCCTCTGCGTCTTTATAGCCAGCCAAGTGCAAAGCAAGTGCGAA
TGGAAGGTAGAAGGAGTAATAGGCAGTCTTATTTTCGACAATTGCTTTGT
AGTTTTCCATTGTGAATTCCGAGACACAGCGGTTCGAGTTCAGTTGGTCC
AACGATTGTCCGCAGGTAGTGATGTTGGATTCTGAAACTCCTTAGCACTA
CATCCATGTGATGCTCTGAATGCTACTGCTTTCATCTAGACTCTTATGCA
TCAGCCCTCTCACTGTGCACAGTGC

MXO02043.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:57:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG12389-PA 1260 Fpps-RA 701..1257 575..19 2685 99.2 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:30:56
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 787..1343 575..19 2725 99.3 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:30:54
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11305872..11306099 198..425 1095 98.7 Plus
2R 25286936 2R 11305633..11305813 19..199 890 99.4 Plus
2R 25286936 2R 11306159..11306309 425..575 755 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:30:55 has no hits.

MXO02043.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:44 Download gff for MXO02043.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12389-PA 685..1260 15..587 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:26 Download gff for MXO02043.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 771..1349 11..587 97   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:58 Download gff for MXO02043.3prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 771..1349 11..587 97   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:58 Download gff for MXO02043.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 11305627..11305811 11..197 97 <- Plus
2R 11305872..11306098 198..424 98 <- Plus
2R 11306159..11306309 425..575 100 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:26 Download gff for MXO02043.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7193132..7193316 11..197 97 <- Plus
arm_2R 7193377..7193603 198..424 98 <- Plus
arm_2R 7193664..7193814 425..575 100 == Plus

MXO02043.5prime Sequence

881 bp (795 high quality bases) assembled on 2007-04-04

> MXO02043.5prime
CAGTCGACATGTTTAAACTGGCCCGTATGCTCCTGCCGCAGCAGCGGATC
CTGGCCAGCCCGCTGCGCCTGCAACGCCTGATCTCTACCAGCGACGAGGT
CAACGCAGAGCCCATCATCAAGTCCATGGACACCATTGGCGGCCTCCCCA
CCGAACTGGTCAACGAACAGAAGCTGAAGAAGACTAGCAGAACCTTATCG
ACGCTCCAAAATCACTCGGTTCCCATTGCCGCTCGCGTCACGGTGTCGAA
AGATGAGAGTCGCGACTTTATGGCCGTGTTCCCAGATCTTGTGCGTGACA
TCACCACCGTGACGAAGGCATACAATTGCAGCGACGCAGCCAAATGGTTC
GCCCAAGTCCTCCAGTACAATGTGCCCAGGGGCAAGAAGAACCGCGGCAT
CCTCACCGTGCTCACGTATAAGAATCTAGTGCCCACCCAGGATCTTACGC
CGGAGAACATAAAGCTCGCCCAGTATCTGGGCTGGTGCGTGGAAATGCTC
CAAAGTTTTTTCATCATCTCAGACGATGTGATGGACAACAGCACCACCAG
ACGCGGCCAACCCTGCTGGCACAAGGTGGAGAACGTGGGCCTGACTGCCA
TTAACGATGCTCTTATGATTGAAAACGCCATGTATGCCATTCTCAAGAAG
CACTTCAGCCACTTGGACTGCTATGTCGCCCTAATGGAGCTCTTCCACGA
AATCACATACATCACTACCTGCGGACAATCGTTGGACCAACTGAACTCGA
ACCGCTGTGTCTCGGAATTCACAATGGAAAACTACAAAGCAATTGTCGAT
AATAAGACTGCCTATTACTCCTTCTACCTTCCATTCGCACTTGCTTTGCA
CTTGGCTGGCTATAAAGACGCAGAGGCCTTC

MXO02043.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:15 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:14:18
Subject Length Description Subject Range Query Range Score Percent Strand
Fpps-RA 1465 CG12389-RA 87..959 9..881 4335 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:14:16
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 11306159..11306521 859..497 1800 99.7 Minus
2R 25286936 2R 11306580..11306794 497..283 1060 99.5 Minus
2R 25286936 2R 11307261..11307442 190..9 910 100 Minus
2R 25286936 2R 11306865..11306962 285..188 490 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:14:17 has no hits.

MXO02043.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:27:19 Download gff for MXO02043.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..959 9..881 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:51 Download gff for MXO02043.5prime
Subject Subject Range Query Range Percent Splice Strand
Fpps-RA 87..959 9..881 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:51 Download gff for MXO02043.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 11306077..11306098 860..881 100 <- Minus
2R 11306159..11306520 498..859 99 <- Minus
2R 11306580..11306791 286..497 99 <- Minus
2R 11306865..11306959 191..285 100 <- Minus
2R 11307261..11307442 9..190 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:27:19 Download gff for MXO02043.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 7194085..7194296 286..497 99 <- Minus
arm_2R 7194370..7194464 191..285 100 <- Minus
arm_2R 7194766..7194947 9..190 100   Minus
arm_2R 7193582..7193603 860..881 100 <- Minus
arm_2R 7193664..7194025 498..859 99 <- Minus