MXO02046.5prime Sequence
822 bp (800 high quality bases) assembled on 2007-04-02
> MXO02046.5prime
CAGTCGACATGGCACTTTGGGTGCCAAATACCGTCCGCGGGAGCTGTCCA
AATTGGACTTCCACAAGGATCAAGCGGAGAACCTACGCAACCTTTGCAAG
CAGAGCGATTTTCCTCATCTGATGTTCTACGGACCCTCGGGTGCTGGCAA
GAAGACACGCATCATGTGCCTGCTACGGGAGATGTACGGATCCGGCGTTG
AGCGGTTGAGGAGCGAGACCATGACATTCACCACGCCATCCAATCGGAAG
GTAGAGGTGATGACGGTCAGCAGCAACTACCACTTGGAGGTGAATCCCTC
CGACGCTGGCATGTACGACCGCACGGTGGTGATCGATCTCATCAAGCAGG
TGGCCCAGACGCATCAAATTGAGATTAGTGGCCAACGGGAATTCAAGGTG
ATTGTAATTTCGGAGGGCGACGAACTCACCAAGGATGCCCAGCACGCCCT
GCGCCGTACGATGGAGAAATATGTGGCCACGTGCCGGATAATCATATCGG
TGAACTCCACATCTCGGATCATTCCGGCCATACGGTCGCGTTGCCTGGGC
ATACGGGTGGCGGCTCCCAACGAAACGGAGATCGTGTCCATCTTGCAGAA
CACTTGCAAGCGGGAGGGACTCGCACTGCCCGTGGAGCTGGCCAAACGGG
TTGTGGACAAGTCGGAGCGCAATCTCAGGCGAGCACTTTTGATGCTGGAG
GCCGCCAAGGTGGCCAAGGCGCCGTTTACCGCCAATCAGGAGATTCCCGA
CCTGGACTGGCAGGTGTTCCTGCGTGAGACAGCATCTCAGATTATCAGTG
AGCAAACGCCTGCCAAACTGGA
MXO02046.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6258-PA | 1071 | RfC38-RA | 19..815 | 26..822 | 3985 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RfC38-RB | 1604 | CG6258-RB | 471..1289 | 5..822 | 4025 | 99.5 | Plus |
| RfC38-RA | 1276 | CG6258-RA | 143..961 | 5..822 | 4025 | 99.5 | Plus |
| Nup160-RA | 4747 | CG4738-RA | 4659..4747 | 822..734 | 445 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 11129247..11130003 | 822..66 | 3785 | 100 | Minus |
| 2L | 23513712 | 2L | 11130111..11130175 | 68..5 | 230 | 93.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:13 has no hits.
MXO02046.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:45 Download gff for
MXO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6258-PA | 1..814 | 9..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:54 Download gff for
MXO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..960 | 1..821 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:31 Download gff for
MXO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RfC38-RA | 140..960 | 1..821 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:31 Download gff for
MXO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 11129248..11130001 | 68..821 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:54 Download gff for
MXO02046.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 11129248..11130001 | 68..821 | 100 | <- | Minus |
