MXO02048.5prime Sequence
528 bp (528 high quality bases) assembled on 2007-04-02
> MXO02048.5prime
CAGTCGACATGTCGCAGCAACCTGTTGCCTTTTTAACCCGTCGCGAAACT
TTCAGCGCCTGCCATCGTCTCCATAGTCCCCAATTGAGCGACGCCGAGAA
TCTGGAAGTCTTCGGCAAGTGCAACAATTTCCACGGCCACGGACACAACT
ATACAGTTGAGATAACCGTCCGTGGTCCCATCGATCGGCGAACCGGAATG
GTGCTAAACATCACCGAGCTGAAAGAGGCTATAGAAACTGTGATTATGAA
GCGCCTGGACCACAAGAATCTCGATAAGGATGTCGAATACTTTGCCAATA
CACCAAGCACCACAGAAAACTTGGCCGTTTACATCTGGGACAACATCCGT
CTGCAGCTGAAGAAGCCGGAGCTGCTGTACGAGGTGAAGATCCATGAGAC
CCCAAAGAACATTATCAGCTACCGCGGCCCGTATCCGCTCAATGGCATCT
ACAACCCCATCAACAAACGCATCGCTCACGATTCGTGCACCAACATCTCG
TCGGATTCGGATGCAAGCTTTCTAGACC
MXO02048.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16784-PC | 507 | pr-RC | 1..504 | 9..512 | 2520 | 100 | Plus |
| CG16784-PB | 507 | pr-RB | 1..504 | 9..512 | 2520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| pr-RC | 1073 | CG16784-RC | 370..873 | 9..512 | 2520 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20073919..20074128 | 512..303 | 1050 | 100 | Minus |
| 2L | 23513712 | 2L | 20074191..20074339 | 302..154 | 745 | 100 | Minus |
| 2L | 23513712 | 2L | 20074771..20074852 | 156..75 | 410 | 100 | Minus |
| 2L | 23513712 | 2L | 20074958..20075025 | 76..9 | 340 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:10:40 has no hits.
MXO02048.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:46 Download gff for
MXO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16784-PB | 1..507 | 9..515 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:28:14 Download gff for
MXO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-RC | 362..882 | 1..522 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:49 Download gff for
MXO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| pr-RC | 362..882 | 1..522 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:49 Download gff for
MXO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20073910..20074128 | 303..522 | 98 | <- | Minus |
| 2L | 20074191..20074336 | 157..302 | 100 | <- | Minus |
| 2L | 20074771..20074850 | 77..156 | 100 | <- | Minus |
| 2L | 20074958..20075031 | 1..76 | 94 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:28:14 Download gff for
MXO02048.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20073910..20074128 | 303..522 | 98 | <- | Minus |
| arm_2L | 20074191..20074336 | 157..302 | 100 | <- | Minus |
| arm_2L | 20074771..20074850 | 77..156 | 100 | <- | Minus |
| arm_2L | 20074958..20075031 | 1..76 | 94 | | Minus |
