MXO02049.3prime Sequence
611 bp (576 high quality bases) assembled on 2007-01-18
> MXO02049.3prime
ATGGTCTAGAAAGCTTGCTCGTATGGCCTGTGACATGTGCAATGGGGTCA
CCATTAGGGTAAGCTCCGCGTCCTTTAAATTTGCCCCACGCAAATTTGCC
TCCTGCAAGTCGCTGCCAGAAAGATTGCATTTTTCCAAGTCGGCACCTGC
TAACACCGCAGCTCGCAAATTACAGTTCTTCATATTGGCGTTCTTCAAAT
TTGCCACACGTAAGTTAACACCGGCCATGTTGCTGCTTTCCAAACATGCT
CCTTTGAGGTTAACACCCTCTAGATTAGTTCGAACTCCTGTTGGGTCTTC
AAAATTACACCCACGCAAGTTTGCACCTTCCATATTGGCGCAAAGTCCCC
GCACTGACACTAGTTGGGCACATTCCAAGTTTGCGTACTGAAGATCCGCC
CGTTCAAGACAGCAGTAGTTAAGATTGGTGTGGGACAAATTGCAGTGAGA
CATGTTGGCATACTTGAAGTTAATGTTGCGAAAATCTAGCTTTCGTAGAT
CGGCCCCAGACAGATTAACGCCTTGAAAGCGCAGCTCCGTTATCACGGAG
GTCTGAATGATGGCCTTGATGACGTCGTTGCGCGTCAATGGTCTGTCCCC
CACGCCTCTGT
MXO02049.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-PA | 1095 | CG14647-RA | 509..1092 | 602..19 | 2920 | 100 | Minus |
CG41469-PA | 303 | CG41469-RA | 1..187 | 23..209 | 935 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1178 | CG14647-RB | 490..1073 | 602..19 | 2920 | 100 | Minus |
CG9853-RB | 1818 | CG9853-RB | 116..306 | 19..209 | 955 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4401600..4401912 | 331..19 | 1565 | 100 | Minus |
3R | 32079331 | 3R | 4400999..4401138 | 602..463 | 700 | 100 | Minus |
3R | 32079331 | 3R | 4401352..4401486 | 464..330 | 675 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:25 has no hits.
MXO02049.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:46 Download gff for
MXO02049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 502..1095 | 16..611 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:49 Download gff for
MXO02049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 483..1082 | 11..611 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:55 Download gff for
MXO02049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 483..1082 | 11..611 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:55 Download gff for
MXO02049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4400992..4401138 | 463..611 | 97 | -> | Minus |
3R | 4401354..4401485 | 331..462 | 100 | -> | Minus |
3R | 4401601..4401919 | 13..330 | 98 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:49 Download gff for
MXO02049.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 226714..226860 | 463..611 | 97 | -> | Minus |
arm_3R | 227076..227207 | 331..462 | 100 | -> | Minus |
arm_3R | 227323..227641 | 13..330 | 98 | -> | Minus |
MXO02049.5prime Sequence
712 bp (686 high quality bases) assembled on 2007-04-02
> MXO02049.5prime
CAGTCGACATGACGGGGGAAGAACGGGAAGATAAAGCAGCTGAGAATTGC
CAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAATAGTGATCT
GAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACCGGCAGCCG
GCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGGTCAAACTG
AACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTGGTGGGCAG
AGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGGCAGCATGA
AGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATCGAAGTCCT
CGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAATTCGTATG
CGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCGGTTCTTCG
GAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGACAGCAGGAG
ACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATCAAGGCCAT
CATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGTTAATCTGT
CTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACTTCAAGTAT
GCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAACTACTGCTG
TCTTGAACGGGC
MXO02049.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-PA | 1095 | CG14647-RA | 10..713 | 9..712 | 3520 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG14647-RB | 1178 | CG14647-RB | 1..694 | 19..712 | 3470 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 4400500..4401138 | 9..647 | 3195 | 100 | Plus |
3R | 32079331 | 3R | 4401352..4401418 | 646..712 | 335 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:21:27 has no hits.
MXO02049.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:47 Download gff for
MXO02049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-PA | 3..713 | 1..712 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:18 Download gff for
MXO02049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..694 | 19..712 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:01 Download gff for
MXO02049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG14647-RB | 1..694 | 19..712 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:01 Download gff for
MXO02049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 4400493..4401138 | 1..647 | 99 | -> | Plus |
3R | 4401354..4401418 | 648..712 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:18 Download gff for
MXO02049.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 226215..226860 | 1..647 | 99 | -> | Plus |
arm_3R | 227076..227140 | 648..712 | 100 | | Plus |