Clone MXO02049 Report

Search the DGRC for MXO02049

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:49
Vector:pMK33-CTAP-BD
Associated Gene/Transcript
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02049.3prime Sequence

611 bp (576 high quality bases) assembled on 2007-01-18

> MXO02049.3prime
ATGGTCTAGAAAGCTTGCTCGTATGGCCTGTGACATGTGCAATGGGGTCA
CCATTAGGGTAAGCTCCGCGTCCTTTAAATTTGCCCCACGCAAATTTGCC
TCCTGCAAGTCGCTGCCAGAAAGATTGCATTTTTCCAAGTCGGCACCTGC
TAACACCGCAGCTCGCAAATTACAGTTCTTCATATTGGCGTTCTTCAAAT
TTGCCACACGTAAGTTAACACCGGCCATGTTGCTGCTTTCCAAACATGCT
CCTTTGAGGTTAACACCCTCTAGATTAGTTCGAACTCCTGTTGGGTCTTC
AAAATTACACCCACGCAAGTTTGCACCTTCCATATTGGCGCAAAGTCCCC
GCACTGACACTAGTTGGGCACATTCCAAGTTTGCGTACTGAAGATCCGCC
CGTTCAAGACAGCAGTAGTTAAGATTGGTGTGGGACAAATTGCAGTGAGA
CATGTTGGCATACTTGAAGTTAATGTTGCGAAAATCTAGCTTTCGTAGAT
CGGCCCCAGACAGATTAACGCCTTGAAAGCGCAGCTCCGTTATCACGGAG
GTCTGAATGATGGCCTTGATGACGTCGTTGCGCGTCAATGGTCTGTCCCC
CACGCCTCTGT

MXO02049.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-PA 1095 CG14647-RA 509..1092 602..19 2920 100 Minus
CG41469-PA 303 CG41469-RA 1..187 23..209 935 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:26
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-RB 1178 CG14647-RB 490..1073 602..19 2920 100 Minus
CG9853-RB 1818 CG9853-RB 116..306 19..209 955 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:24
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4401600..4401912 331..19 1565 100 Minus
3R 32079331 3R 4400999..4401138 602..463 700 100 Minus
3R 32079331 3R 4401352..4401486 464..330 675 100 Minus
Blast to na_te.dros performed on 2014-11-28 23:32:25 has no hits.

MXO02049.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:46 Download gff for MXO02049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-PA 502..1095 16..611 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:49 Download gff for MXO02049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 483..1082 11..611 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:55 Download gff for MXO02049.3prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 483..1082 11..611 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:55 Download gff for MXO02049.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 4400992..4401138 463..611 97 -> Minus
3R 4401354..4401485 331..462 100 -> Minus
3R 4401601..4401919 13..330 98 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:49 Download gff for MXO02049.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 226714..226860 463..611 97 -> Minus
arm_3R 227076..227207 331..462 100 -> Minus
arm_3R 227323..227641 13..330 98 -> Minus

MXO02049.5prime Sequence

712 bp (686 high quality bases) assembled on 2007-04-02

> MXO02049.5prime
CAGTCGACATGACGGGGGAAGAACGGGAAGATAAAGCAGCTGAGAATTGC
CAGGCATTGTGGAAATTTTTTAAACTTCCCAATCAAATGAATAGTGATCT
GAAGGAGAGTGGTTCCGGAGCCAGAAAAGACGACGCCGCACCGGCAGCCG
GCGATTTCGTCGCCGCTAGCGGATTCGCTCCCAATCGTTGGGTCAAACTG
AACGTGGGTGGACAAATCTACGCCACTACCATCGACACTCTGGTGGGCAG
AGAACCGGATTCAATGCTTGCTAGGATGTTCCTGCAAAATGGCAGCATGA
AGCCCAGCGAGCGTGACGAGCAGGGAGCATACCTGATTGATCGAAGTCCT
CGATATTTCGAGCCGATCATCAACTACCTCCGCCACGGACAATTCGTATG
CGATTCGAACATCAGTGTGTTGGGTGTTTTGGAGGAGGCGCGGTTCTTCG
GAATCTTTTCGCTTGTCACCCATTTGGAGGAACGCCTGGGACAGCAGGAG
ACGCCGCTGGGGGACAGACCATTGACGCGCAACGACGTCATCAAGGCCAT
CATTCAGACCTCCGTGATAACGGAGCTGCGCTTTCAAGGCGTTAATCTGT
CTGGGGCCGATCTACGAAAGCTAGATTTTCGCAACATTAACTTCAAGTAT
GCCAACATGTCTCACTGCAATTTGTCCCACACCAATCTTAACTACTGCTG
TCTTGAACGGGC

MXO02049.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-PA 1095 CG14647-RA 10..713 9..712 3520 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:21:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG14647-RB 1178 CG14647-RB 1..694 19..712 3470 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:21:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 4400500..4401138 9..647 3195 100 Plus
3R 32079331 3R 4401352..4401418 646..712 335 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:21:27 has no hits.

MXO02049.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:47 Download gff for MXO02049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-PA 3..713 1..712 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:18 Download gff for MXO02049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..694 19..712 100   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:01 Download gff for MXO02049.5prime
Subject Subject Range Query Range Percent Splice Strand
CG14647-RB 1..694 19..712 100   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:01 Download gff for MXO02049.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 4400493..4401138 1..647 99 -> Plus
3R 4401354..4401418 648..712 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:18 Download gff for MXO02049.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 226215..226860 1..647 99 -> Plus
arm_3R 227076..227140 648..712 100   Plus