MXO02052.3prime Sequence
482 bp (428 high quality bases) assembled on 2007-01-18
> MXO02052.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGACCTTGTTCTTTAGGTTTTCAAGAT
AAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAAG
TCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGCC
ACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCAA
AGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCTG
GCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACAT
ACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTAG
CGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTCG
TTTAATCCAATCAAAAAGTTGGGCCGCATCANCTCGATACTCACANGGCA
GTGGCCANGCAGGGCAACCGCCAGCGGGGGGC
MXO02052.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 383..840 | 480..19 | 2150 | 99.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 505..962 | 480..19 | 2210 | 99.1 | Minus |
CG4594-RA | 1099 | CG4594-RA | 501..958 | 480..19 | 2210 | 99.1 | Minus |
CG4598-RB | 1216 | CG4598-RB | 640..803 | 315..152 | 250 | 77.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920861..9921318 | 480..19 | 2110 | 99.1 | Minus |
2L | 23513712 | 2L | 9919544..9919707 | 315..152 | 250 | 76.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:31 has no hits.
MXO02052.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:48 Download gff for
MXO02052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 382..843 | 18..482 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:54 Download gff for
MXO02052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 500..958 | 19..482 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:59 Download gff for
MXO02052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 500..958 | 19..482 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:59 Download gff for
MXO02052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920860..9921318 | 19..482 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:54 Download gff for
MXO02052.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920860..9921318 | 19..482 | 98 | | Minus |
MXO02052.5prime Sequence
779 bp (636 high quality bases) assembled on 2007-04-02
> MXO02052.5prime
CAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCCACGGGGCT
CCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTGGAGATCAA
CGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCCGGTGAATA
GCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTAGCGAAATT
GAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGCTCCAATGT
GTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGACGTGGAGC
GACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTGCCCTCTAT
GGAACAACTTTGCCCACGGCAGCAGCCTTTTTTGCCCCCCCCCCCGCTGG
CGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCGGCCCAACT
TTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCACCCAAGTGG
CTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCAGAGCGAGC
TCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGAAGTTGGCC
TGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGAAGTGCGCT
GCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGCGGACTGAC
CAAGCTCCAGTTCGGTGTCGACAACATAAAGGAGTTGGAGATGATTCGCG
AGAAAGATATTGCTGACTTTGTAGCTTCT
MXO02052.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:22
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-PA | 843 | CG4594-RA | 1..369 | 9..377 | 1845 | 100 | Plus |
CG4594-PA | 843 | CG4594-RA | 383..768 | 391..776 | 1830 | 98.9 | Plus |
CG4598-PA | 846 | CG4598-RA | 55..131 | 63..139 | 185 | 89.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4594-RB | 1103 | CG4594-RB | 123..890 | 9..776 | 3675 | 98.6 | Plus |
CG4594-RA | 1099 | CG4594-RA | 119..886 | 9..776 | 3675 | 98.6 | Plus |
CG4598-RB | 1216 | CG4598-RB | 151..793 | 63..705 | 500 | 72.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 9920861..9921246 | 391..776 | 1870 | 99 | Plus |
2L | 23513712 | 2L | 9920374..9920602 | 9..237 | 1145 | 100 | Plus |
2L | 23513712 | 2L | 9920654..9920794 | 237..377 | 705 | 100 | Plus |
2L | 23513712 | 2L | 9918935..9919101 | 63..229 | 325 | 79.6 | Plus |
2L | 23513712 | 2L | 9919383..9919697 | 391..705 | 255 | 72.1 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:39:36 has no hits.
MXO02052.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:49 Download gff for
MXO02052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-PA | 1..770 | 9..779 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:59 Download gff for
MXO02052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..888 | 2..779 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:59 Download gff for
MXO02052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4594-RA | 113..888 | 2..779 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:59 Download gff for
MXO02052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
2L | 9920654..9920800 | 237..383 | 97 | -> | Plus |
2L | 9920854..9921248 | 384..779 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:59 Download gff for
MXO02052.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
arm_2L | 9920654..9920800 | 237..383 | 97 | -> | Plus |
arm_2L | 9920854..9921248 | 384..779 | 97 | | Plus |