Clone MXO02052 Report

Search the DGRC for MXO02052

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:52
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4594-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02052.3prime Sequence

482 bp (428 high quality bases) assembled on 2007-01-18

> MXO02052.3prime
ATGGTCTAGAAAGCTTGCTTTCTTGACCTTGTTCTTTAGGTTTTCAAGAT
AAGCTCCCATAACCTTCTGCACTCCCGGGCTAGAAGCTAGAGCTACAAAG
TCAGCAATATCTTTCTCGCGAATCATCTCAAACTCCTTAATGTTGTCGCC
ACGGAACTGGAGCTTGGTCAGTCCGCGGGCCAAAGGATTGACCTTAGCAA
AGGTGCCGATGAAGGCAGCGCACTTCTCCAAGGCCTCTTCCTTGCTGCTG
GCGATCTCATCGATCAGGCCAACTTCAAAGGCCTCCTGTGTGGTGAACAT
ACGTCCTTGGGTGAGAGCTCGCTCTGCCACCCGTTTGGGCAGTATGCTAG
CGAAGCCGGACATTAGCCACTTGGGTGCAATGATTCCTAGTTGGGCTTCG
TTTAATCCAATCAAAAAGTTGGGCCGCATCANCTCGATACTCACANGGCA
GTGGCCANGCAGGGCAACCGCCAGCGGGGGGC

MXO02052.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 383..840 480..19 2150 99.1 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 505..962 480..19 2210 99.1 Minus
CG4594-RA 1099 CG4594-RA 501..958 480..19 2210 99.1 Minus
CG4598-RB 1216 CG4598-RB 640..803 315..152 250 77.6 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920861..9921318 480..19 2110 99.1 Minus
2L 23513712 2L 9919544..9919707 315..152 250 76.8 Minus
Blast to na_te.dros performed on 2014-11-28 23:32:31 has no hits.

MXO02052.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:48 Download gff for MXO02052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 382..843 18..482 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:54 Download gff for MXO02052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 500..958 19..482 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:15:59 Download gff for MXO02052.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 500..958 19..482 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:15:59 Download gff for MXO02052.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920860..9921318 19..482 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:54 Download gff for MXO02052.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920860..9921318 19..482 98   Minus

MXO02052.5prime Sequence

779 bp (636 high quality bases) assembled on 2007-04-02

> MXO02052.5prime
CAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCCACGGGGCT
CCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTGGAGATCAA
CGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCCGGTGAATA
GCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTAGCGAAATT
GAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGCTCCAATGT
GTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGACGTGGAGC
GACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTGCCCTCTAT
GGAACAACTTTGCCCACGGCAGCAGCCTTTTTTGCCCCCCCCCCCGCTGG
CGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCGGCCCAACT
TTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCACCCAAGTGG
CTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCAGAGCGAGC
TCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGAAGTTGGCC
TGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGAAGTGCGCT
GCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGCGGACTGAC
CAAGCTCCAGTTCGGTGTCGACAACATAAAGGAGTTGGAGATGATTCGCG
AGAAAGATATTGCTGACTTTGTAGCTTCT

MXO02052.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:22
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-PA 843 CG4594-RA 1..369 9..377 1845 100 Plus
CG4594-PA 843 CG4594-RA 383..768 391..776 1830 98.9 Plus
CG4598-PA 846 CG4598-RA 55..131 63..139 185 89.6 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:39:37
Subject Length Description Subject Range Query Range Score Percent Strand
CG4594-RB 1103 CG4594-RB 123..890 9..776 3675 98.6 Plus
CG4594-RA 1099 CG4594-RA 119..886 9..776 3675 98.6 Plus
CG4598-RB 1216 CG4598-RB 151..793 63..705 500 72.2 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:39:35
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 9920861..9921246 391..776 1870 99 Plus
2L 23513712 2L 9920374..9920602 9..237 1145 100 Plus
2L 23513712 2L 9920654..9920794 237..377 705 100 Plus
2L 23513712 2L 9918935..9919101 63..229 325 79.6 Plus
2L 23513712 2L 9919383..9919697 391..705 255 72.1 Plus
Blast to na_te.dros performed on 2014-11-28 18:39:36 has no hits.

MXO02052.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:49 Download gff for MXO02052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-PA 1..770 9..779 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:15:59 Download gff for MXO02052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..888 2..779 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:31:59 Download gff for MXO02052.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4594-RA 113..888 2..779 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:31:59 Download gff for MXO02052.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 9920368..9920601 2..236 98 -> Plus
2L 9920654..9920800 237..383 97 -> Plus
2L 9920854..9921248 384..779 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:15:59 Download gff for MXO02052.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 9920368..9920601 2..236 98 -> Plus
arm_2L 9920654..9920800 237..383 97 -> Plus
arm_2L 9920854..9921248 384..779 97   Plus