MXO02054.3prime Sequence
376 bp (293 high quality bases) assembled on 2007-01-18
> MXO02054.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTAGTTGGCACAGCTGCCGCTGGCGT
ACTCCGGGTCCTCGCAGGTCAGCGTGTGCTCGTCGAAGACCTTGTCCTCG
CCGCAGCTGATCAGGCGCGGATGGCCCTCCACGCAAGTGATCAGGCGGTG
GCAGTCGCCGGCGACGGGGAACCGGGGGAAGGGCCAGAAGCGAGCGGCCA
CCGAGTTGGGGTCCACCTTGGTGGGGCACTTGAAGCCAACGACCGCCTCG
GGATTGCAGTGCTCCAGCAGCTGATCCGGCCAGTTGCAGCCATGGATCCT
TTCGTCGTANGCCAACCCGGCGTCGCAGTCCTGCTCGTGCGGCTCACCGT
GGGCGCACTTGATGTAGGTGGTGGAG
MXO02054.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17058-PA | 693 | Peritrophin-A-RA | 333..690 | 376..19 | 1771 | 99.7 | Minus |
CG17058-PB | 693 | Peritrophin-A-RB | 333..690 | 376..19 | 1771 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 1348 | CG17058-RB | 569..926 | 376..19 | 1779 | 99.7 | Minus |
Peritrophin-A-RA | 1238 | CG17058-RA | 459..816 | 376..19 | 1779 | 99.7 | Minus |
Peritrophin-A-RC | 1406 | CG17058-RC | 751..978 | 246..19 | 1140 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20247548..20247775 | 246..19 | 1140 | 100 | Minus |
X | 23542271 | X | 20247256..20247386 | 376..246 | 644 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:16:58 has no hits.
MXO02054.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:50 Download gff for
MXO02054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PB | 333..693 | 18..376 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:01 Download gff for
MXO02054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 459..816 | 19..376 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:01 Download gff for
MXO02054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 459..816 | 19..376 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:01 Download gff for
MXO02054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20247256..20247386 | 246..376 | 99 | -> | Minus |
X | 20247549..20247775 | 19..245 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:01 Download gff for
MXO02054.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20118330..20118460 | 246..376 | 99 | -> | Minus |
arm_X | 20118623..20118849 | 19..245 | 100 | | Minus |
MXO02054.5prime Sequence
565 bp (552 high quality bases) assembled on 2007-04-02
> MXO02054.5prime
CAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCCTGGCCTGG
ATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGCCCCGAGAA
GTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCAGTTCTTCC
TCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACGGACTGCTC
TTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAACTGGGCGGT
GGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCACGCCGGCCT
GCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCTCCACCACC
TACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGCGACGCCGG
GTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGATCAGCTGC
TGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCCCCACCAAG
GTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCCCGGTTCCC
CGTCCCCGGCGACTG
MXO02054.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG17058-PA | 693 | Peritrophin-A-RA | 1..557 | 9..565 | 2760 | 99.8 | Plus |
CG17058-PB | 693 | Peritrophin-A-RB | 1..557 | 9..565 | 2760 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Peritrophin-A-RB | 1348 | CG17058-RB | 235..793 | 7..565 | 2780 | 99.8 | Plus |
Peritrophin-A-RA | 1238 | CG17058-RA | 125..683 | 7..565 | 2780 | 99.8 | Plus |
Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 7..471 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:23
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 20246904..20247120 | 60..276 | 1085 | 100 | Plus |
X | 23542271 | X | 20247192..20247386 | 277..471 | 975 | 100 | Plus |
X | 23542271 | X | 20247548..20247642 | 471..565 | 460 | 98.9 | Plus |
X | 23542271 | X | 20244881..20244935 | 7..61 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:24 has no hits.
MXO02054.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:50 Download gff for
MXO02054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG17058-PB | 1..557 | 9..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:19 Download gff for
MXO02054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..683 | 1..565 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:26 Download gff for
MXO02054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Peritrophin-A-RA | 119..683 | 1..565 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:26 Download gff for
MXO02054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 20244875..20244934 | 1..60 | 93 | -> | Plus |
X | 20246905..20247120 | 61..276 | 100 | -> | Plus |
X | 20247192..20247386 | 277..471 | 100 | -> | Plus |
X | 20247549..20247642 | 472..565 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:19 Download gff for
MXO02054.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 20115949..20116008 | 1..60 | 93 | -> | Plus |
arm_X | 20117979..20118194 | 61..276 | 100 | -> | Plus |
arm_X | 20118266..20118460 | 277..471 | 100 | -> | Plus |
arm_X | 20118623..20118716 | 472..565 | 98 | | Plus |