Clone MXO02054 Report

Search the DGRC for MXO02054

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:54
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPeritrophin-A-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02054.3prime Sequence

376 bp (293 high quality bases) assembled on 2007-01-18

> MXO02054.3prime
ATGGTCTAGAAAGCTTGCCTTGCCGTAGTTGGCACAGCTGCCGCTGGCGT
ACTCCGGGTCCTCGCAGGTCAGCGTGTGCTCGTCGAAGACCTTGTCCTCG
CCGCAGCTGATCAGGCGCGGATGGCCCTCCACGCAAGTGATCAGGCGGTG
GCAGTCGCCGGCGACGGGGAACCGGGGGAAGGGCCAGAAGCGAGCGGCCA
CCGAGTTGGGGTCCACCTTGGTGGGGCACTTGAAGCCAACGACCGCCTCG
GGATTGCAGTGCTCCAGCAGCTGATCCGGCCAGTTGCAGCCATGGATCCT
TTCGTCGTANGCCAACCCGGCGTCGCAGTCCTGCTCGTGCGGCTCACCGT
GGGCGCACTTGATGTAGGTGGTGGAG

MXO02054.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:49
Subject Length Description Subject Range Query Range Score Percent Strand
CG17058-PA 693 Peritrophin-A-RA 333..690 376..19 1771 99.7 Minus
CG17058-PB 693 Peritrophin-A-RB 333..690 376..19 1771 99.7 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:00
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 1348 CG17058-RB 569..926 376..19 1779 99.7 Minus
Peritrophin-A-RA 1238 CG17058-RA 459..816 376..19 1779 99.7 Minus
Peritrophin-A-RC 1406 CG17058-RC 751..978 246..19 1140 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:16:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20247548..20247775 246..19 1140 100 Minus
X 23542271 X 20247256..20247386 376..246 644 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 22:16:58 has no hits.

MXO02054.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:50 Download gff for MXO02054.3prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PB 333..693 18..376 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:01 Download gff for MXO02054.3prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 459..816 19..376 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:01 Download gff for MXO02054.3prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 459..816 19..376 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:01 Download gff for MXO02054.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20247256..20247386 246..376 99 -> Minus
X 20247549..20247775 19..245 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:01 Download gff for MXO02054.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20118330..20118460 246..376 99 -> Minus
arm_X 20118623..20118849 19..245 100   Minus

MXO02054.5prime Sequence

565 bp (552 high quality bases) assembled on 2007-04-02

> MXO02054.5prime
CAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCCTGGCCTGG
ATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGCCCCGAGAA
GTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCAGTTCTTCC
TCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACGGACTGCTC
TTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAACTGGGCGGT
GGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCACGCCGGCCT
GCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCTCCACCACC
TACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGCGACGCCGG
GTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGATCAGCTGC
TGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCCCCACCAAG
GTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGCCCTTCCCCCGGTTCCC
CGTCCCCGGCGACTG

MXO02054.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:25
Subject Length Description Subject Range Query Range Score Percent Strand
CG17058-PA 693 Peritrophin-A-RA 1..557 9..565 2760 99.8 Plus
CG17058-PB 693 Peritrophin-A-RB 1..557 9..565 2760 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:25
Subject Length Description Subject Range Query Range Score Percent Strand
Peritrophin-A-RB 1348 CG17058-RB 235..793 7..565 2780 99.8 Plus
Peritrophin-A-RA 1238 CG17058-RA 125..683 7..565 2780 99.8 Plus
Peritrophin-A-RC 1406 CG17058-RC 125..589 7..471 2325 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:23
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20246904..20247120 60..276 1085 100 Plus
X 23542271 X 20247192..20247386 277..471 975 100 Plus
X 23542271 X 20247548..20247642 471..565 460 98.9 Plus
X 23542271 X 20244881..20244935 7..61 275 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:07:24 has no hits.

MXO02054.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:50 Download gff for MXO02054.5prime
Subject Subject Range Query Range Percent Splice Strand
CG17058-PB 1..557 9..565 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:19 Download gff for MXO02054.5prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..683 1..565 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:26 Download gff for MXO02054.5prime
Subject Subject Range Query Range Percent Splice Strand
Peritrophin-A-RA 119..683 1..565 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:26 Download gff for MXO02054.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20244875..20244934 1..60 93 -> Plus
X 20246905..20247120 61..276 100 -> Plus
X 20247192..20247386 277..471 100 -> Plus
X 20247549..20247642 472..565 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:19 Download gff for MXO02054.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20115949..20116008 1..60 93 -> Plus
arm_X 20117979..20118194 61..276 100 -> Plus
arm_X 20118266..20118460 277..471 100 -> Plus
arm_X 20118623..20118716 472..565 98   Plus