MXO02055.3prime Sequence
648 bp (648 high quality bases) assembled on 2007-01-18
> MXO02055.3prime
ATGGTCTAGAAAGCTTGCCTTGTCCTTGCCGTTGGGTGCTCCGTTCTCCT
TGCCCTTCACCTCGCTTTCATTTGCCTTAACGTTGAGGTGAGCGGGTCCC
ACTTGCTGAATTTGAATGATGCGCTCCTTGGACTTGTCCTCGACGGCCTG
CGGCTTGGGAATACTGACGGTGAGCACGCCATCCGACGACAGCTGCGAGA
CCACTTGCTCCGCCTTGTAGCCATCGGGAACCTTGTAGCGGCGCACAAAG
TGGCGCATGATGTGACCATGGTCGTCCTGGCGTTCCTCATGCTTGCCCTC
GACCAAGATGGAGTCGTCCACCACCTTCACGTTGAGCTCACTGGGCTTGA
ACTGGGCGACGTCCATGCACACCTGGAATCCATCCTTGCCCACATGGGCG
GTTGCCGGCCAGTGAATGTCGTTGCGGTTGGCCATCTCGCGCCGCAAAGC
CAAAACCTGGCCGGCGGGCGACGATGGGCATATCGGCGATGCGCAAGGGC
ATCCGTTGATGGAACGGCGCTGCTGAGTGCCAAGGGGCAGCACGTAGCGG
GAATGCGGATGCAATCCCAGTCCAAGCTCGTAGATGGGGCTGCGGGGCTC
CTGGAGTTCATCCACAAGCGAAAGCAGAGTAGATAGCGACATGTCGAC
MXO02055.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:58:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4183-PA | 627 | Hsp26-RA | 1..624 | 642..19 | 3120 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp26-RB | 1010 | CG4183-RB | 240..863 | 642..19 | 3120 | 100 | Minus |
| Hsp26-RA | 958 | CG4183-RA | 188..811 | 642..19 | 3120 | 100 | Minus |
| Hsp23-RB | 884 | CG4463-RB | 318..630 | 387..75 | 350 | 74.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9376565..9377188 | 19..642 | 3120 | 100 | Plus |
| 3L | 28110227 | 3L | 9382199..9382511 | 387..75 | 335 | 73.8 | Minus |
| 3L | 28110227 | 3L | 9384438..9384590 | 393..241 | 330 | 81 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:21 has no hits.
MXO02055.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:51 Download gff for
MXO02055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4183-PA | 1..627 | 15..642 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:36 Download gff for
MXO02055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 182..816 | 14..648 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:20 Download gff for
MXO02055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 182..816 | 14..648 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:20 Download gff for
MXO02055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9376560..9377194 | 14..648 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:36 Download gff for
MXO02055.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9369660..9370294 | 14..648 | 99 | | Plus |
MXO02055.5prime Sequence
648 bp (648 high quality bases) assembled on 2007-04-04
> MXO02055.5prime
CAGTCGACATGTCGCTATCTACTCTGCTTTCGCTTGTGGATGAACTCCAG
GAGCCCCGCAGCCCCATCTACGAGCTTGGACTGGGATTGCATCCGCATTC
CCGCTACGTGCTGCCCCTTGGCACTCAGCAGCGCCGTTCCATCAACGGAT
GCCCTTGCGCATCGCCGATATGCCCATCGTCGCCCGCCGGCCAGGTTTTG
GCTTTGCGGCGCGAGATGGCCAACCGCAACGACATTCACTGGCCGGCAAC
CGCCCATGTGGGCAAGGATGGATTCCAGGTGTGCATGGACGTCGCCCAGT
TCAAGCCCAGTGAGCTCAACGTGAAGGTGGTGGACGACTCCATCTTGGTC
GAGGGCAAGCATGAGGAACGCCAGGACGACCATGGTCACATCATGCGCCA
CTTTGTGCGCCGCTACAAGGTTCCCGATGGCTACAAGGCGGAGCAAGTGG
TCTCGCAGCTGTCGTCGGATGGCGTGCTCACCGTCAGTATTCCCAAGCCG
CAGGCCGTCGAGGACAAGTCCAAGGAGCGCATCATTCAAATTCAGCAAGT
GGGACCCGCTCACCTCAACGTTAAGGCAAATGAAAGCGAGGTGAAGGGCA
AGGAGAACGGAGCACCCAACGGCAAGGACAAGGCAAGCTTTCTAGACC
MXO02055.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:26 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hsp26-RB | 1010 | CG4183-RB | 240..863 | 9..632 | 3120 | 100 | Plus |
| Hsp26-RA | 958 | CG4183-RA | 188..811 | 9..632 | 3120 | 100 | Plus |
| Hsp23-RB | 884 | CG4463-RB | 318..630 | 264..576 | 350 | 74.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:50
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 9376565..9377188 | 632..9 | 3120 | 100 | Minus |
| 3L | 28110227 | 3L | 9382199..9382511 | 264..576 | 335 | 73.8 | Plus |
| 3L | 28110227 | 3L | 9384438..9384590 | 258..410 | 330 | 81 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:01:51 has no hits.
MXO02055.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:48:28 Download gff for
MXO02055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 181..816 | 1..637 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:47:45 Download gff for
MXO02055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hsp26-RA | 181..816 | 1..637 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:47:45 Download gff for
MXO02055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 9376560..9377195 | 1..637 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:48:28 Download gff for
MXO02055.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 9369660..9370295 | 1..637 | 99 | | Minus |
