MXO02056.5prime Sequence
414 bp (414 high quality bases) assembled on 2007-04-04
> MXO02056.5prime
CAGTCGACATGGTGCGTATGAACGTATTGGCCGATGCCCTGAAGTGCATA
AACAACGCCGAGAAGCGTGGCAAGCGGCAGGTGCTGCTGCGTCCCTGCTC
CAAGGTGATCATCAAGTTCCTGACCGTGATGATGAAGCATGGCTATATCG
GCGAATTCGAGATCGTCGAGGATCACCGTGCCGGCAAGATCGTTGTCAAC
CTGACCGGTCGGCTAAACAAGTGCGGCGTCATCTCGCCCCGCTTCGATGC
GCCCATCAACGACATCGAGAAGTGGACCAACAATCTGTTGCCCTCGCGTC
AGTTTGGTTACGTTGTGCTCACCACCTCTGGCGGCATCATGGACCACGAG
GAGGCTAGGAGAAAACATTTGGGAGGCAAAATTCTCGGCTTCTTCTTCGC
AAGCTTTCTAGACC
MXO02056.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:27 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:43:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..527 | 9..398 | 1950 | 100 | Plus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 8..398 | 1850 | 98.2 | Plus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 8..398 | 1850 | 98.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:43:52
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822202 | 9..398 | 1950 | 100 | Plus |
| X | 23542271 | X | 13335988..13336378 | 398..8 | 1850 | 98.2 | Minus |
| 2L | 23513712 | 2L | 14747021..14747075 | 398..344 | 245 | 96.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:43:53 has no hits.
MXO02056.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:12 Download gff for
MXO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 1..398 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:34 Download gff for
MXO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 133..527 | 1..398 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:18:34 Download gff for
MXO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821808..10822202 | 1..398 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:12 Download gff for
MXO02056.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709313..6709707 | 1..398 | 98 | | Plus |
MXO02056.3prime Sequence
414 bp (414 high quality bases) assembled on 2007-01-18
> MXO02056.3prime
ATGGTCTAGAAAGCTTGCGAAGAAGAAGCCGAGAATTTTGCCTCCCAAAT
GTTTTCTCCTAGCCTCCTCGTGGTCCATGATGCCGCCAGAGGTGGTGAGC
ACAACGTAACCAAACTGACGCGAGGGCAACAGATTGTTGGTCCACTTCTC
GATGTCGTTGATGGGCGCATCGAAGCGGGGCGAGATGACGCCGCACTTGT
TTAGCCGACCGGTCAGGTTGACAACGATCTTGCCGGCACGGTGATCCTCG
ACGATCTCGAATTCGCCGATATAGCCATGCTTCATCATCACGGTCAGGAA
CTTGATGATCACCTTGGAGCAGGGACGCAGCAGCACCTGCCGCTTGCCAC
GCTTCTCGGCGTTGTTTATGCACTTCAGGGCATCGGCCAATACGTTCATA
CGCACCATGTCGAC
MXO02056.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12324-PA | 393 | RpS15Ab-RA | 1..390 | 408..19 | 1950 | 100 | Minus |
| CG2033-PC | 393 | RpS15Aa-RC | 1..390 | 408..19 | 1775 | 98.2 | Minus |
| CG2033-PA | 393 | RpS15Aa-RA | 1..390 | 408..19 | 1775 | 98.2 | Minus |
| CG2033-PD | 393 | RpS15Aa-RD | 1..390 | 408..19 | 1775 | 98.2 | Minus |
| CG2033-PE | 393 | RpS15Aa-RE | 1..390 | 408..19 | 1775 | 98.2 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpS15Ab-RA | 724 | CG12324-RA | 138..527 | 408..19 | 1950 | 100 | Minus |
| RpS15Aa-RF | 674 | CG2033-RF | 69..459 | 409..19 | 1850 | 98.2 | Minus |
| RpS15Aa-RE | 741 | CG2033-RE | 136..526 | 409..19 | 1850 | 98.2 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 10821813..10822202 | 408..19 | 1950 | 100 | Minus |
| X | 23542271 | X | 13335988..13336378 | 19..409 | 1850 | 98.2 | Plus |
| 2L | 23513712 | 2L | 14747021..14747075 | 19..73 | 245 | 96.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:16 has no hits.
MXO02056.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:51 Download gff for
MXO02056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12324-PA | 1..393 | 18..408 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:11 Download gff for
MXO02056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 130..527 | 19..414 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:39 Download gff for
MXO02056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpS15Ab-RA | 130..527 | 19..414 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:39 Download gff for
MXO02056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 10821805..10822202 | 19..414 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:11 Download gff for
MXO02056.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 6709310..6709707 | 19..414 | 98 | | Minus |
