Clone MXO02057 Report

Search the DGRC for MXO02057

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:57
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptgnu-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02057.3prime Sequence

745 bp (744 high quality bases) assembled on 2007-01-18

> MXO02057.3prime
ATGGTCTAGAAAGCTTGCGAAGAATTGCTTGGCCAGTTGGATAATATTCA
TGGCCAATCGGATCTCCCGGGCGCCGCGAACGCCCAGTGCCGCCAAGTCC
TCCAGGGTCATTTGGATGAGCACCTCGATGTCGATCTCCTGGCGCGTGAA
CAGCTCTGTGAGATGCGCGTTTCCGGTGCGATCGAGCAGGGATTTGACCC
GAGGACTCAAAGTGGGGTGCTCCACCGGGGAGCAGGGCTTATAGCGTGAA
TGATGGATACTGGGAGTGGGACTTCTTGGGTCCTCCACTTTAATCTTTCG
CGCACTTTTCAACTTGGATTCCTCCTGCCTCAGCCGCGTTTCCTGCTGCA
GTCGGATATCCGGCTTTGGTCTGTCTTCTCTCTTAGTTCTCAGTAGTTTC
GAATCTCCAGATTCTCCCAGTAGCCTGGTCTCCCCATTTATAAGGGTACT
TTGACTTGTGGGCGAAAATACGGAACGCGTGCGCATAAATTTCTGTGAAA
ATCGACGGGGCAAAGTGGATTCCGATAGTCGTTTTAACCCGGACAATGCC
GGTCGACTGTTAGGAACCGTAAGATTATTGTTCTTCGGCATTCCAAAGAG
TCCGTATCTCGCGGTACCCTTCCTGCCAACGCCTCCAGTGGGCGTGACAT
CTTCGAATGTAAAAGCTTCGGTGGAGAGGGGAGTGAGTGGGGTCAGTGGG
GATGCGGGATCTCTATAGACGCGATTGTAGCGCTCCATGTCGACT

MXO02057.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG5272-PA 723 gnu-RA 1..720 738..19 3600 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:24
Subject Length Description Subject Range Query Range Score Percent Strand
gnu-RA 923 CG5272-RA 102..821 738..19 3600 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:22
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14802482..14803175 19..712 3470 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:22:23 has no hits.

MXO02057.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:52 Download gff for MXO02057.3prime
Subject Subject Range Query Range Percent Splice Strand
CG5272-PA 1..723 16..738 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:59 Download gff for MXO02057.3prime
Subject Subject Range Query Range Percent Splice Strand
gnu-RA 97..821 19..745 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:11 Download gff for MXO02057.3prime
Subject Subject Range Query Range Percent Splice Strand
gnu-RA 97..821 19..745 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:11 Download gff for MXO02057.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 14802482..14803173 19..710 100 <- Plus
3L 14803232..14803264 711..745 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:59 Download gff for MXO02057.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14795582..14796273 19..710 100 <- Plus
arm_3L 14796332..14796364 711..745 91   Plus

MXO02057.5prime Sequence

744 bp (744 high quality bases) assembled on 2007-04-02

> MXO02057.5prime
CAGTCGACATGGAGCGCTACAATCGCGTCTATAGAGATCCCGCATCCCCA
CTGACCCCACTCACTCCCCTCTCCACCGAAGCTTTTACATTCGAAGATGT
CACGCCCACTGGAGGCGTTGGCAGGAAGGGTACCGCGAGATACGGACTCT
TTGGAATGCCGAAGAACAATAATCTTACGGTTCCTAACAGTCGACCGGCA
TTGTCCGGGTTAAAACGACTATCGGAATCCACTTTGCCCCGTCGATTTTC
ACAGAAATTTATGCGCACGCGTTCCGTATTTTCGCCCACAAGTCAAAGTA
CCCTTATAAATGGGGAGACCAGGCTACTGGGAGAATCTGGAGATTCGAAA
CTACTGAGAACTAAGAGAGAAGACAGACCAAAGCCGGATATCCGACTGCA
GCAGGAAACGCGGCTGAGGCAGGAGGAATCCAAGTTGAAAAGTGCGCGAA
AGATTAAAGTGGAGGACCCAAGAAGTCCCACTCCCAGTATCCATCATTCA
CGCTATAAGCCCTGCTCCCCGGTGGAGCACCCCACTTTGAGTCCTCGGGT
CAAATCCCTGCTCGATCGCACCGGAAACGCGCATCTCACAGAGCTGTTCA
CGCGCCAGGAGATCGACATCGAGGTGCTCATCCAAATGACCCTGGAGGAC
TTGGCGGCACTGGGCGTTCGCGGCGCCCGGGAGATCCGATTGGCCATGAA
TATTATCCAACTGGCCAAGCAATTCTTCGCAAGCTTTCTAGACC

MXO02057.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG5272-PA 723 gnu-RA 1..720 9..728 3600 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:24
Subject Length Description Subject Range Query Range Score Percent Strand
gnu-RA 923 CG5272-RA 102..821 9..728 3600 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:21
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 14802482..14803175 728..35 3470 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:01:22 has no hits.

MXO02057.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:52 Download gff for MXO02057.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5272-PA 1..723 9..731 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:59 Download gff for MXO02057.5prime
Subject Subject Range Query Range Percent Splice Strand
gnu-RA 96..821 1..728 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:35 Download gff for MXO02057.5prime
Subject Subject Range Query Range Percent Splice Strand
gnu-RA 96..821 1..728 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:35 Download gff for MXO02057.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 14802482..14803173 37..728 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:59 Download gff for MXO02057.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 14795582..14796273 37..728 100 <- Minus