MXO02058.5prime Sequence
564 bp (564 high quality bases) assembled on 2007-04-02
> MXO02058.5prime
CAGTCGACATGGCATTCTTCAAATCCCTCATCTGCCTGGCCGTCCTGAGC
GCCGCCTCCGCCGGAGTCCTCCACGGACATGGTGCTGGTCTCTACGCCGC
CGCCCCGGCCATCTATGCCGGCCATGGTCACCACGACGAGGGAATCGATT
ACCATGCCTACCCCAAGTACCACTACAACTACGGAGTGGCTGACTCTCAC
ACCGGAGACGTGAAGTCGCAGCACGAAGTGCGTGATGGTGATGTCGTCAA
GGGATCCTACTCTCTGGTGGAGCCCGATGGTTCGGTGCGCACCGTGGAGT
ACACCGCCGATGACCACAATGGCTTCAACGCCGTCGTCCACAAGACCGGC
CCCACTGTGCACCACGCCGCTCCCGCTGTGGTTGCCCACGCCGCTCCCGC
CGTGGTCCATGCCGCTCCGGCCTATGCCCCAGCCATTGCCCACCATGTGG
CCGCCGCTCCCGCCGTGCCCTACGCCGGATCCCTGGCGCATCAGGTGCCC
GCCTACGGATACGCCACCCACAACGCTCACGCGCATGTGGCCCACTACGC
AAGCTTTCTAGACC
MXO02058.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1919-PA | 543 | CG1919-RA | 1..540 | 9..548 | 2700 | 100 | Plus |
| CG7072-PA | 1224 | CG7072-RA | 361..457 | 258..354 | 310 | 92.7 | Plus |
| CG9290-PA | 597 | CG9290-RA | 382..419 | 294..331 | 190 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cpr62Bc-RB | 1017 | CG1919-RB | 81..620 | 9..548 | 2700 | 100 | Plus |
| Cpr62Bc-RA | 1134 | CG1919-RA | 81..620 | 9..548 | 2700 | 100 | Plus |
| CG34461-RB | 1873 | CG34461-RB | 306..504 | 156..354 | 455 | 81.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 1840795..1841187 | 548..156 | 1965 | 100 | Minus |
| 3L | 28110227 | 3L | 1841760..1841892 | 156..24 | 665 | 100 | Minus |
| 3L | 28110227 | 3L | 8337932..8338104 | 176..348 | 445 | 83.8 | Plus |
| 3L | 28110227 | 3L | 8326842..8326938 | 258..354 | 380 | 92.8 | Plus |
| 3L | 28110227 | 3L | 4211097..4211189 | 311..219 | 210 | 81.7 | Minus |
| 3L | 28110227 | 3L | 4216023..4216075 | 231..283 | 190 | 90.6 | Plus |
| 3L | 28110227 | 3L | 19520076..19520113 | 294..331 | 190 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:11:16 has no hits.
MXO02058.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:53 Download gff for
MXO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1919-PA | 1..543 | 9..552 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:14 Download gff for
MXO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 1..553 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:07 Download gff for
MXO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cpr62Bc-RA | 75..624 | 1..553 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:07 Download gff for
MXO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 1840791..1841187 | 156..553 | 99 | <- | Minus |
| 3L | 1841761..1841892 | 24..155 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:14 Download gff for
MXO02058.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 1840791..1841187 | 156..553 | 99 | <- | Minus |
| arm_3L | 1841761..1841892 | 24..155 | 100 | <- | Minus |
