MXO02059.5prime Sequence
402 bp (402 high quality bases) assembled on 2007-04-02
> MXO02059.5prime
CAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATGAGTTCACC
AAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCACGTCCTCTT
CAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTACTGCGTCA
AGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGGGCAACTCG
CACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAGGATTTGAA
CTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTTGCCCACTC
TGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCTGCTCCAAT
CAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGCTTTCTAGA
CC
MXO02059.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..378 | 9..386 | 1890 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..578 | 8..386 | 1895 | 100 | Plus |
cl-RB | 689 | CG11024-RB | 215..593 | 8..386 | 1895 | 100 | Plus |
cl-RA | 615 | CG11024-RA | 141..519 | 8..386 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521286 | 236..386 | 755 | 100 | Plus |
2L | 23513712 | 2L | 5520400..5520545 | 8..153 | 730 | 100 | Plus |
2L | 23513712 | 2L | 5520618..5520700 | 153..235 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:07:58 has no hits.
MXO02059.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:53 Download gff for
MXO02059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 9..390 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:16 Download gff for
MXO02059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00 Download gff for
MXO02059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:00 Download gff for
MXO02059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
2L | 5521136..5521290 | 236..391 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:16 Download gff for
MXO02059.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
arm_2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
arm_2L | 5521136..5521290 | 236..391 | 98 | | Plus |
MXO02059.3prime Sequence
402 bp (402 high quality bases) assembled on 2007-01-18
> MXO02059.3prime
ATGGTCTAGAAAGCTTGCATCCTCATCCTCGAACATCATCTCGACGAGAT
CCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCGC
AACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGGG
GCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACGA
AGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTCC
GCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGCC
ACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATCT
TTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTCG
AC
MXO02059.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11024-PA | 381 | cl-RA | 1..378 | 396..19 | 1890 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
cl-RC | 674 | CG11024-RC | 200..578 | 397..19 | 1895 | 100 | Minus |
cl-RB | 689 | CG11024-RB | 215..593 | 397..19 | 1895 | 100 | Minus |
cl-RA | 615 | CG11024-RA | 141..519 | 397..19 | 1895 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:05
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 5521136..5521286 | 169..19 | 755 | 100 | Minus |
2L | 23513712 | 2L | 5520400..5520545 | 397..252 | 730 | 100 | Minus |
2L | 23513712 | 2L | 5520618..5520700 | 252..170 | 415 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:06 has no hits.
MXO02059.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:53 Download gff for
MXO02059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11024-PA | 1..381 | 15..396 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:02 Download gff for
MXO02059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..523 | 14..402 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:06 Download gff for
MXO02059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
cl-RA | 134..523 | 14..402 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:06 Download gff for
MXO02059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 5520393..5520545 | 252..402 | 97 | -> | Minus |
2L | 5520619..5520700 | 170..251 | 100 | -> | Minus |
2L | 5521136..5521290 | 14..169 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:02 Download gff for
MXO02059.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 5520393..5520545 | 252..402 | 97 | -> | Minus |
arm_2L | 5520619..5520700 | 170..251 | 100 | -> | Minus |
arm_2L | 5521136..5521290 | 14..169 | 98 | | Minus |