Clone MXO02059 Report

Search the DGRC for MXO02059

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:59
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptcl-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02059.5prime Sequence

402 bp (402 high quality bases) assembled on 2007-04-02

> MXO02059.5prime
CAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATGAGTTCACC
AAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCACGTCCTCTT
CAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTACTGCGTCA
AGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGGGCAACTCG
CACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAGGATTTGAA
CTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTTGCCCACTC
TGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCTGCTCCAAT
CAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGCTTTCTAGA
CC

MXO02059.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..378 9..386 1890 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:07:59
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..578 8..386 1895 100 Plus
cl-RB 689 CG11024-RB 215..593 8..386 1895 100 Plus
cl-RA 615 CG11024-RA 141..519 8..386 1895 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:07:58
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521286 236..386 755 100 Plus
2L 23513712 2L 5520400..5520545 8..153 730 100 Plus
2L 23513712 2L 5520618..5520700 153..235 415 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:07:58 has no hits.

MXO02059.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:53 Download gff for MXO02059.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 9..390 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:16 Download gff for MXO02059.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 1..391 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:00 Download gff for MXO02059.5prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 132..523 1..391 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:00 Download gff for MXO02059.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520391..5520545 1..153 97 -> Plus
2L 5520619..5520700 154..235 100 -> Plus
2L 5521136..5521290 236..391 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:16 Download gff for MXO02059.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520391..5520545 1..153 97 -> Plus
arm_2L 5520619..5520700 154..235 100 -> Plus
arm_2L 5521136..5521290 236..391 98   Plus

MXO02059.3prime Sequence

402 bp (402 high quality bases) assembled on 2007-01-18

> MXO02059.3prime
ATGGTCTAGAAAGCTTGCATCCTCATCCTCGAACATCATCTCGACGAGAT
CCTGATTGGAGCAGCGCTCGCCATCCAGACGCTGTGGCCGCTTCCAGCGC
AACAGAGTGGGCAAGAAGATCAGATGCGTGTTGGGATCCTTGCGGAAGGG
GCAGTTCAAATCCTTCCAGTATGCCCGCTCGCCCACATCCACATGCACGA
AGTGCGAGTTGCCCGGGGCCTTCTTCAGCGCATCGTGTATCACCGGCTCC
GCCTTGACGCAGTAGGGGCACCAGCTCTCTCCTTTCTCGTCCTTGCCGCC
ACTGAAGAGGACGTGGACCGGCTCGTCGCCGTTCTCCAGTTCCTCCATCT
TTTTGGTGAACTCATCGTATCCCTTGACGTTGTGTGTGACCACCATGTCG
AC

MXO02059.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11024-PA 381 cl-RA 1..378 396..19 1890 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:08
Subject Length Description Subject Range Query Range Score Percent Strand
cl-RC 674 CG11024-RC 200..578 397..19 1895 100 Minus
cl-RB 689 CG11024-RB 215..593 397..19 1895 100 Minus
cl-RA 615 CG11024-RA 141..519 397..19 1895 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:05
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 5521136..5521286 169..19 755 100 Minus
2L 23513712 2L 5520400..5520545 397..252 730 100 Minus
2L 23513712 2L 5520618..5520700 252..170 415 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:17:06 has no hits.

MXO02059.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:53 Download gff for MXO02059.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11024-PA 1..381 15..396 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:02 Download gff for MXO02059.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..523 14..402 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:06 Download gff for MXO02059.3prime
Subject Subject Range Query Range Percent Splice Strand
cl-RA 134..523 14..402 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:06 Download gff for MXO02059.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 5520393..5520545 252..402 97 -> Minus
2L 5520619..5520700 170..251 100 -> Minus
2L 5521136..5521290 14..169 98   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:02 Download gff for MXO02059.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 5520393..5520545 252..402 97 -> Minus
arm_2L 5520619..5520700 170..251 100 -> Minus
arm_2L 5521136..5521290 14..169 98   Minus