MXO02061.5prime Sequence
703 bp (615 high quality bases) assembled on 2007-04-02
> MXO02061.5prime
CAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGGCGGCGGTT
GCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGTGCGGCGGA
CTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGGCAGCTTGC
GCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACTCTGTGCTG
CACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAGGTGCAGTC
TGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCATTACGTGG
AAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGAACGAGCCC
CAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGTCTGGCTGG
TTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTTGTATTCGG
GCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCCAGGCGGAA
GAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTCGCCGTGGC
CTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCCCGTAGTGC
CCTTCCCTACCTCGCTGGAGGACCTTAACTACATGGCCAGTGACCTGTAC
GATGAGGCAAAGGATCTAATCCTTCCCCAAAAAGAAGGCAAGCTTTCTAG
ACC
MXO02061.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5903-PA | 681 | CG5903-RA | 1..663 | 9..671 | 3290 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5903-RC | 2392 | CG5903-RC | 277..959 | 4..687 | 3365 | 99.6 | Plus |
| CG5903-RB | 995 | CG5903-RB | 164..846 | 4..687 | 3365 | 99.6 | Plus |
| CG5903-RA | 1487 | CG5903-RA | 277..959 | 4..687 | 3365 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16145834..16146359 | 687..161 | 2570 | 99.6 | Minus |
| 3R | 32079331 | 3R | 16146423..16146579 | 160..4 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:30 has no hits.
MXO02061.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:54 Download gff for
MXO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-PA | 1..681 | 9..688 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:03 Download gff for
MXO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..687 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:38 Download gff for
MXO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..687 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:38 Download gff for
MXO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16145834..16146359 | 161..687 | 99 | <- | Minus |
| 3R | 16146423..16146581 | 1..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:03 Download gff for
MXO02061.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11971556..11972081 | 161..687 | 99 | <- | Minus |
| arm_3R | 11972145..11972303 | 1..160 | 98 | | Minus |
