MXO02062.5prime Sequence
501 bp (501 high quality bases) assembled on 2007-04-02
> MXO02062.5prime
CAGTCGACATGCCGGAACCGCGCAGTCCGATGGCCAGTTTTGCCGAGTCG
GTGCTGAATGTCATCGATGGACCCATAACTTGGTTCCGTGAGAGCATTGT
GGAGCCGAACCAGCAGAAGCAGAATTGGTACCACCAGCGCTTCCGCCGCG
TTCCGACGATCGACCAGTGCTACACGGACGATGCCGTCTGCCGTTTCGAG
GCCGATCAGCAGTTCCGCCGGGATCGCATGGTCGACAACGAGATTGTCAA
CATTCTGCGCCAGCGCTTCGAGGACTGCACCCTCTACGAGGCACCCGATC
ACATGGTCAAGTGCAGGCCGCTGATGGATCAGTACGAGAAGGCCACCGAG
AACTGGTTCATCAAGTATGGCGACTTGGGAGGTTATGCCAATGCCAAGAC
CGCGTACATGAAGCAGAAGCATCGTCTGATCTGGGAGCGTCGCCACGGAC
CAGTGGGCAGTGGCATGAAGGAGGAGGCCGCCCACGCAAGCTTTCTAGAC
C
MXO02062.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8844-PA | 480 | Pdsw-RA | 1..476 | 9..484 | 2280 | 99.1 | Plus |
| CG8844-PB | 480 | Pdsw-RB | 1..476 | 9..484 | 2280 | 99.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pdsw-RB | 738 | CG8844-RB | 179..654 | 9..484 | 2320 | 99.2 | Plus |
| Pdsw-RA | 651 | CG8844-RA | 92..567 | 9..484 | 2320 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 3466786..3467062 | 90..366 | 1385 | 100 | Plus |
| 2L | 23513712 | 2L | 3467133..3467250 | 367..484 | 530 | 96.6 | Plus |
| 2L | 23513712 | 2L | 3466335..3466416 | 9..90 | 410 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:18:23 has no hits.
MXO02062.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:54 Download gff for
MXO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8844-PB | 1..480 | 9..489 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:47 Download gff for
MXO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdsw-RA | 86..574 | 1..492 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:29 Download gff for
MXO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pdsw-RA | 86..574 | 1..492 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:29 Download gff for
MXO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 3466329..3466416 | 1..90 | 95 | -> | Plus |
| 2L | 3466787..3467062 | 91..366 | 100 | -> | Plus |
| 2L | 3467133..3467255 | 367..490 | 93 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:47 Download gff for
MXO02062.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 3467133..3467255 | 367..490 | 93 | -> | Plus |
| arm_2L | 3466329..3466416 | 1..90 | 95 | -> | Plus |
| arm_2L | 3466787..3467062 | 91..366 | 100 | -> | Plus |
