MXO02064.3prime Sequence
848 bp (568 high quality bases) assembled on 2007-01-18
> MXO02064.3prime
ATGGTCTAGAAAGCTTGCCTTTCTAGCCTGGTCGTAGTTTTCTATGTACC
ACTTAACCGAGGCGTTGATTGCCGTTTCCAAGTCCGTAAATGCGTAGTCT
GGCAGGAAGGAGCGAAGCTTGGCATTAGACGCAGTCTTTTTGTACTGTCC
ATCCGACTTGCTCGTATCACAGACCAGTCTTCCATTAAAATTAAATGCTT
TTGCAACGGCCTGTGCCACCTCGAAGATGGTCACCTCTTGCACTTCGTCC
GCGCTTAGGATGATGGGCTCCACACTTTCGTAGTTCCTGAGCACCCAGAT
CATCAGCTCCGCCAGGTCCCGGGAGTATACAAACTGCCGTAGTGGCATGC
CGCTTCCGAAAACGGTGAACACCTTGTCGTTTTCGGGGACGTCAGTCTTC
TCCGTAACCAGCTGGTGCATCCTATAGATCATGCCCGGAATGACGTGGCT
GACCTCTGGATTATAGTTGTCGTGGGGACCGAATATGTTGCACGGAATGA
CTGAGGTGTACACCCGGCCATATTTATCGTGGTAGGCGTGGTTCTGCACG
TCTATCAGTCGCTTTGCGTAGGAGTAACCATAATTGGAGGGGTGCGGCGG
CCCGTTGTGCACCATGGTCTCATCTATGGGGTAGCTGGTTTTGTCCGGAA
AAATGCAGGTGGACAGGCAGGACACCACCTTTACGCAGCCCTGTTCGTGT
GCCGTTTGCAGGACATTGTCGTTAATGAGCAGGTTGTTGCGCAAGAAGTC
CAGGTTGTTGTTCATGTTGTGGAACAGGCCTCCGACCATTGCAGCCAGAT
GGATGACATGCGTGGGCTTCTCTCGGGCGAAGAGTGCCTGCGTGGCGG
MXO02064.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:56
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3495-PA | 966 | Gmer-RA | 134..963 | 848..19 | 3875 | 98.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:54
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 1116 | CG3495-RA | 232..1061 | 848..19 | 3985 | 98.7 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22887849..22888415 | 183..749 | 2640 | 97.7 | Plus |
2R | 25286936 | 2R | 22887629..22887793 | 19..183 | 825 | 100 | Plus |
2R | 25286936 | 2R | 22888466..22888572 | 742..848 | 535 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:49:53 has no hits.
MXO02064.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:56 Download gff for
MXO02064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3495-PA | 134..966 | 15..848 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:45 Download gff for
MXO02064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 232..1066 | 11..848 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:23 Download gff for
MXO02064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 232..1066 | 11..848 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:23 Download gff for
MXO02064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22887624..22887793 | 11..183 | 97 | <- | Plus |
2R | 22887850..22888407 | 184..741 | 98 | <- | Plus |
2R | 22888466..22888572 | 742..848 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:45 Download gff for
MXO02064.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18775147..18775316 | 11..183 | 97 | <- | Plus |
arm_2R | 18775373..18775930 | 184..741 | 98 | <- | Plus |
arm_2R | 18775989..18776095 | 742..848 | 100 | | Plus |
MXO02064.5prime Sequence
731 bp (699 high quality bases) assembled on 2007-04-02
> MXO02064.5prime
CAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGCTGGTGGGC
AAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGACGAGCAATG
GTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGCCGCCACGC
AGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATCTGGCTGCA
ATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGACTTCTTGCG
CAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACACGAACAGG
GCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTCCGGACAAA
ACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCGCCGCACCC
CTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGTGCAGAACC
ACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCATTCCGTGC
AACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGCCACGTCAT
TCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAAGACTGACG
TCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCATGCCACTA
CGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATCTGGGTGCT
CAGGAACTACGAAAGTGTGGAGCCCATCATC
MXO02064.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3495-PA | 966 | Gmer-RA | 1..723 | 9..731 | 3340 | 98.4 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Gmer-RA | 1116 | CG3495-RA | 98..821 | 8..731 | 3455 | 98.5 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22887925..22888415 | 731..241 | 2320 | 98.2 | Minus |
2R | 25286936 | 2R | 22888466..22888580 | 248..134 | 575 | 100 | Minus |
2R | 25286936 | 2R | 22888635..22888760 | 133..8 | 570 | 96.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:18:29 has no hits.
MXO02064.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:56 Download gff for
MXO02064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3495-PA | 1..723 | 9..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:52 Download gff for
MXO02064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 98..821 | 8..731 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:32 Download gff for
MXO02064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Gmer-RA | 98..821 | 8..731 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:32 Download gff for
MXO02064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22887925..22888407 | 249..731 | 98 | <- | Minus |
2R | 22888466..22888580 | 134..248 | 100 | <- | Minus |
2R | 22888635..22888760 | 8..133 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:52 Download gff for
MXO02064.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 18776158..18776283 | 8..133 | 96 | | Minus |
arm_2R | 18775989..18776103 | 134..248 | 100 | <- | Minus |
arm_2R | 18775448..18775930 | 249..731 | 98 | <- | Minus |