Clone MXO02064 Report

Search the DGRC for MXO02064

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:64
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptGmer-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02064.3prime Sequence

848 bp (568 high quality bases) assembled on 2007-01-18

> MXO02064.3prime
ATGGTCTAGAAAGCTTGCCTTTCTAGCCTGGTCGTAGTTTTCTATGTACC
ACTTAACCGAGGCGTTGATTGCCGTTTCCAAGTCCGTAAATGCGTAGTCT
GGCAGGAAGGAGCGAAGCTTGGCATTAGACGCAGTCTTTTTGTACTGTCC
ATCCGACTTGCTCGTATCACAGACCAGTCTTCCATTAAAATTAAATGCTT
TTGCAACGGCCTGTGCCACCTCGAAGATGGTCACCTCTTGCACTTCGTCC
GCGCTTAGGATGATGGGCTCCACACTTTCGTAGTTCCTGAGCACCCAGAT
CATCAGCTCCGCCAGGTCCCGGGAGTATACAAACTGCCGTAGTGGCATGC
CGCTTCCGAAAACGGTGAACACCTTGTCGTTTTCGGGGACGTCAGTCTTC
TCCGTAACCAGCTGGTGCATCCTATAGATCATGCCCGGAATGACGTGGCT
GACCTCTGGATTATAGTTGTCGTGGGGACCGAATATGTTGCACGGAATGA
CTGAGGTGTACACCCGGCCATATTTATCGTGGTAGGCGTGGTTCTGCACG
TCTATCAGTCGCTTTGCGTAGGAGTAACCATAATTGGAGGGGTGCGGCGG
CCCGTTGTGCACCATGGTCTCATCTATGGGGTAGCTGGTTTTGTCCGGAA
AAATGCAGGTGGACAGGCAGGACACCACCTTTACGCAGCCCTGTTCGTGT
GCCGTTTGCAGGACATTGTCGTTAATGAGCAGGTTGTTGCGCAAGAAGTC
CAGGTTGTTGTTCATGTTGTGGAACAGGCCTCCGACCATTGCAGCCAGAT
GGATGACATGCGTGGGCTTCTCTCGGGCGAAGAGTGCCTGCGTGGCGG

MXO02064.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 04:59:56
Subject Length Description Subject Range Query Range Score Percent Strand
CG3495-PA 966 Gmer-RA 134..963 848..19 3875 98.6 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:49:54
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 1116 CG3495-RA 232..1061 848..19 3985 98.7 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:49:52
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22887849..22888415 183..749 2640 97.7 Plus
2R 25286936 2R 22887629..22887793 19..183 825 100 Plus
2R 25286936 2R 22888466..22888572 742..848 535 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:49:53 has no hits.

MXO02064.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:56 Download gff for MXO02064.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3495-PA 134..966 15..848 98   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:45 Download gff for MXO02064.3prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 232..1066 11..848 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:23 Download gff for MXO02064.3prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 232..1066 11..848 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:23 Download gff for MXO02064.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22887624..22887793 11..183 97 <- Plus
2R 22887850..22888407 184..741 98 <- Plus
2R 22888466..22888572 742..848 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:45 Download gff for MXO02064.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18775147..18775316 11..183 97 <- Plus
arm_2R 18775373..18775930 184..741 98 <- Plus
arm_2R 18775989..18776095 742..848 100   Plus

MXO02064.5prime Sequence

731 bp (699 high quality bases) assembled on 2007-04-02

> MXO02064.5prime
CAGTCGACATGAAAAAAGTACTGGTAACAGGCGGAACTGGGCTGGTGGGC
AAGGCCCTGGAGGCTGTGATCAAGGAGCAGTCCCCAGAGGACGAGCAATG
GTTTTTTGCTGGCTCTAAAGATGCAGATTTGACAAATCTGGCCGCCACGC
AGGCACTCTTCGCCCGAGAGAAGCCCACGCATGTCATCCATCTGGCTGCA
ATGGTCGGAGGCCTGTTCCACAACATGAACAACAACCTGGACTTCTTGCG
CAACAACCTGCTCATTAACGACAATGTCCTGCAAACGGCACACGAACAGG
GCTGCGTAAAGGTGGTGTCCTGCCTGTCCACCTGCATTTTTCCGGACAAA
ACCAGCTACCCCATAGATGAGACCATGGTGCACAACGGGCCGCCGCACCC
CTCCAATTATGGTTACTCCTACGCAAAGCGACTGATAGACGTGCAGAACC
ACGCCTACCACGATAAATATGGCCGGGTGTACACCTCAGTCATTCCGTGC
AACATATTCGGTCCCCACGACAACTATAATCCAGAGGTCAGCCACGTCAT
TCCGGGCATGATCTATAGGATGCACCAGCTGGTTACGGAGAAGACTGACG
TCCCCGAAAACGACAAGGTGTTCACCGTTTTCGGAAGCGGCATGCCACTA
CGGCAGTTTGTATACTCCCGGGACCTGGCGGAGCTGATGATCTGGGTGCT
CAGGAACTACGAAAGTGTGGAGCCCATCATC

MXO02064.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG3495-PA 966 Gmer-RA 1..723 9..731 3340 98.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:29
Subject Length Description Subject Range Query Range Score Percent Strand
Gmer-RA 1116 CG3495-RA 98..821 8..731 3455 98.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22887925..22888415 731..241 2320 98.2 Minus
2R 25286936 2R 22888466..22888580 248..134 575 100 Minus
2R 25286936 2R 22888635..22888760 133..8 570 96.8 Minus
Blast to na_te.dros performed on 2014-11-28 23:18:29 has no hits.

MXO02064.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:56 Download gff for MXO02064.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3495-PA 1..723 9..731 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:17:52 Download gff for MXO02064.5prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 98..821 8..731 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:32 Download gff for MXO02064.5prime
Subject Subject Range Query Range Percent Splice Strand
Gmer-RA 98..821 8..731 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:32 Download gff for MXO02064.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22887925..22888407 249..731 98 <- Minus
2R 22888466..22888580 134..248 100 <- Minus
2R 22888635..22888760 8..133 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:17:52 Download gff for MXO02064.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 18776158..18776283 8..133 96   Minus
arm_2R 18775989..18776103 134..248 100 <- Minus
arm_2R 18775448..18775930 249..731 98 <- Minus