MXO02066.5prime Sequence
762 bp (756 high quality bases) assembled on 2007-04-04
> MXO02066.5prime
CAGTCGACATGAATGATTCATTTGGCGATTTCAATGCCACACAAACTGCG
CCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTGCCCCTGGT
GGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTTGTTCGGCA
TGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACGTGGAGACT
TCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGCAGGATCGA
TGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACCCGAAGTAA
TGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGCAAGGCGGT
TCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGATCCCAACGA
GGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAGGGCCGAGG
ACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTTCTTCCGGC
TCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCCATTGTCAG
TGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAAGAGCAATG
TTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAATTCTCCCAC
ATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATTTCCGAGGG
ACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCACAATGGCAA
GCTTTCTAGACC
MXO02066.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:38 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:59:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RPA2-RB | 905 | CG9273-RB | 102..839 | 9..746 | 3675 | 99.9 | Plus |
| RPA2-RA | 963 | CG9273-RA | 102..839 | 9..746 | 3675 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:59:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20925264..20925850 | 670..84 | 2935 | 100 | Minus |
| 2L | 23513712 | 2L | 20925099..20925174 | 746..671 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 20925913..20925975 | 84..22 | 300 | 98.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:59:11 has no hits.
MXO02066.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:21:37 Download gff for
MXO02066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RPA2-RA | 97..842 | 2..750 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:45:16 Download gff for
MXO02066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RPA2-RA | 97..842 | 2..750 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:45:16 Download gff for
MXO02066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20925095..20925174 | 671..750 | 97 | <- | Minus |
| 2L | 20925264..20925850 | 84..670 | 100 | <- | Minus |
| 2L | 20925914..20925975 | 22..83 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:21:37 Download gff for
MXO02066.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20925095..20925174 | 671..750 | 97 | <- | Minus |
| arm_2L | 20925264..20925850 | 84..670 | 100 | <- | Minus |
| arm_2L | 20925914..20925975 | 22..83 | 98 | <- | Minus |
