MXO02067.3prime Sequence
550 bp (502 high quality bases) assembled on 2007-01-18
> MXO02067.3prime
ATGGTCTAGAAAGCTTGCCTTATCCCGGCTATTGGACATCAGGGCTAGGT
TGCCAAAGGAAGATCCAGCGGACGCTGGCTCGGGGGTGGGGTCAAATGCA
CGGTTGTCCTCAAGGATGATGGTGGTGCGGGGATAGTGATCCAATTGCAC
GAACAGATAACGATACTCCAGTTTACCAGAGTCACTCCTTCTGGACTCCA
GCTGCACGGTGGCCTTGTTCCTCAAGCCCTGCACATAAAACTGCATCCGC
ATGTGGGGCTTTCCATTGCGCTCGTAGCTCGAGTGCGCCACATGCTGTCT
GCGACCGCGCCTGGATGTCTCGCCGAATCCCTTGATGGGCGCACCAATTG
CATCCTGTACCCGCGGATCTTCGACCACACGTCTTAACGCGTCCGCGTAT
ATATTGTTCGGGCTTTCGCTGGAGAATAGCTCTCGGAATATGGCAAAGAA
CATCACGCAGGTCACCCCTAATCCGGCGATTATAATCGCCGTATAACTGG
CCGTCTTGGTGTTCTCCTTGATCTTCTCGCCAATGGGGCGCACATCCGTC
MXO02067.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-PA | 711 | CG7382-RA | 177..708 | 550..19 | 2610 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:45:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-RA | 888 | CG7382-RA | 261..792 | 550..19 | 2630 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5519212..5519575 | 187..550 | 1790 | 99.5 | Plus |
| 2L | 23513712 | 2L | 5518989..5519157 | 19..187 | 845 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:45:19 has no hits.
MXO02067.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:57 Download gff for
MXO02067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-PA | 177..711 | 18..550 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:19:50 Download gff for
MXO02067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 261..797 | 13..550 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:35:34 Download gff for
MXO02067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 261..797 | 13..550 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:35:34 Download gff for
MXO02067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5518984..5519156 | 13..186 | 98 | <- | Plus |
| 2L | 5519212..5519575 | 187..550 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:19:50 Download gff for
MXO02067.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5518984..5519156 | 13..186 | 98 | <- | Plus |
| arm_2L | 5519212..5519575 | 187..550 | 99 | | Plus |
MXO02067.5prime Sequence
418 bp (372 high quality bases) assembled on 2007-04-02
> MXO02067.5prime
CAGTCGACATGTCACGGCTAGCTTCCTTGCGCAATTTGGTCACTCAGCGG
CAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCGGCGGCGAC
GCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGGCGGCGGAT
CCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATGTGCGCCCC
ATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTATACGGCGAT
TATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGCCATATTCC
GAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGGACGCGTTA
AGACGTGTGGTCGAAGATCCGCGGGTTTTTTCCCCCCCCCCCCCGCCCAT
CAAGGGATTCGAAAAAAA
MXO02067.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-PA | 711 | CG7382-RA | 1..368 | 9..376 | 1690 | 98.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:01:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-RA | 888 | CG7382-RA | 85..452 | 9..376 | 1750 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:01:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5519384..5519622 | 376..138 | 1150 | 98.7 | Minus |
| 2L | 23513712 | 2L | 5519683..5519812 | 138..9 | 605 | 97.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:01:37 has no hits.
MXO02067.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:58 Download gff for
MXO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-PA | 1..403 | 9..411 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:07 Download gff for
MXO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..487 | 1..411 | 93 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:56:43 Download gff for
MXO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..487 | 1..411 | 93 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:56:43 Download gff for
MXO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5519349..5519621 | 139..411 | 93 | <- | Minus |
| 2L | 5519683..5519820 | 1..138 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:07 Download gff for
MXO02067.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5519349..5519621 | 139..411 | 93 | <- | Minus |
| arm_2L | 5519683..5519820 | 1..138 | 95 | | Minus |
