Clone Sequence Records
MXO02068.3prime Sequence
687 bp (687 high quality bases) assembled on 2007-01-18
> MXO02068.3prime
ATGGTCTAGAAAGCTTGCACCACCTGTGGTTCCCATCAAGTAAATATCCA
TGGACTGCTTGTCCAGGACGGTCGGGCGCCTCTTTGGAATCGGCTGAATG
TGCGGCAGTCGCGTGCCATTCACGGCGTTCAAACTGAGATTCGAGTTGGG
GTCGTAGTCGTCACAATCCGGAGTAGTCTGGGCCAAGCTCAGCCTCTGCG
ATGGTTTCACCATTAGGTTTGCCCTCGCAAGCTGGCGTTTTTGGATCGCT
GCAGCGCTGGTAGTAGGCACATTGTCTGAATCTTGACTTAAGCTTCTGTG
GGAGCACAGCTCTTCATCGGGAGTCACAATGCCCCCCTCACTGTATGAGG
CACCGAATTCGGAACTTTGGCCAGAGACATGCAAAGAGGGCGCACTTTGG
TGCGACGATGACTGACTGCCGCTGACGTCCGTAATGCTCGCGGCAGTCTC
CCTGGCCATCTTGTGCCGTTTGGCATTGTCGTTCTTCTTCCGGTAGAGTC
GCACCAGGTCCGTGTAGCACTTGCAGCAGATGAGGTTGCCCGCCCGAATT
TCGCTGTTCAGCAAACAGGCGAAGCGCACCAAATATTTGTTGTTCAGTTG
GCGATACGGCTTCCGCAGCGTGTGGTTGCCGACTGCGCAGAATCTCCGCT
CAACGCGCGAGCCCTCGTCAATGGAGGCCATGTCGAC
MXO02068.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6874-PA | 666 | l(3)neo26-RA | 1..663 | 681..19 | 3265 | 99.6 | Minus |
| CG6874-PB | 666 | l(3)neo26-RB | 1..663 | 681..19 | 3265 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:26:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..799 | 681..19 | 3285 | 99.7 | Minus |
| HipHop-RA | 1124 | CG6874-RA | 78..740 | 681..19 | 3285 | 99.7 | Minus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 159..75 | 200 | 82.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:26:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821969 | 681..19 | 3285 | 99.7 | Minus |
| 3R | 32079331 | 3R | 26876364..26876448 | 159..75 | 200 | 82.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:26:58 has no hits.
MXO02068.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:58 Download gff for
MXO02068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PB | 1..666 | 18..681 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:22 Download gff for
MXO02068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 72..740 | 19..687 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:35 Download gff for
MXO02068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 72..740 | 19..687 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:35 Download gff for
MXO02068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821301..18821969 | 19..687 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:22 Download gff for
MXO02068.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814401..18815069 | 19..687 | 99 | | Minus |
MXO02068.5prime Sequence
687 bp (687 high quality bases) assembled on 2007-04-02
> MXO02068.5prime
CAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGCGGAGATTC
TGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAACTGAACAA
CAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAATTCGGGCGG
GCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGACTCTACCGG
AAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAGACTGCCGC
GAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCAAAGTGCGC
CCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCTCATACAGT
GAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCACAGAAGCTT
AAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGCGATCCAAA
AACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGCAGAGGCTG
AGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCCAACTCGAA
TCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACATTCAGCCGA
TTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGGATATTTAC
TTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACC
MXO02068.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6874-PA | 666 | l(3)neo26-RA | 1..663 | 9..671 | 3265 | 99.6 | Plus |
| CG6874-PB | 666 | l(3)neo26-RB | 1..663 | 9..671 | 3265 | 99.6 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..799 | 9..671 | 3285 | 99.7 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 78..740 | 9..671 | 3285 | 99.7 | Plus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 531..615 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821969 | 9..671 | 3285 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26876364..26876448 | 531..615 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:30:14 has no hits.
MXO02068.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:59 Download gff for
MXO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-PB | 1..666 | 9..672 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:35:39 Download gff for
MXO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:05:40 Download gff for
MXO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:05:40 Download gff for
MXO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821298..18821969 | 1..671 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:35:39 Download gff for
MXO02068.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814398..18815069 | 1..671 | 99 | | Plus |
