MXO02069.3prime Sequence
517 bp (468 high quality bases) assembled on 2007-01-18
> MXO02069.3prime
ATGGTCTAGAAAGCTTGCAGGCCAGGATCGCTTGGCTTCGTGTCCCTCGT
ACTTTCCACGGTACTTGAGACCGGTGACTAGGGTGGAGCTCTTGGGGAAA
GCCGTTTTGCCGTCGAATTTGGTATCTGTCTCGGGATGGAATCGCACGTA
CTCGTACTGGATGTGCAAATTCTCCGGCAGCTCGATGCGCTTCAGTGCAT
CAAACGGCACGGTGGTGTCCACAGCTGTTTGGTAGAAAGCGATAACATCG
CTGACGGTGCGCAGTTCATGTACCTGGGAGTTGGGCACTCCGTGCTGCAG
CTCCTGGAAGCACGCGTTCAGGAATTCGAATTTCTCGGAGAGATTCCCCA
ACTGGTCGGATTTCAGTTGAAGCGAGGCGGCTACGGTTCGAATACGTTCG
GCGGCATCTGCAGGTGGGGAGTACGGCTTATGGGGACGCAAGAAGCCCTT
GGCGGCGATGGACTCGCCGACAGCTGAAATGGTGCTGGTTTTGACGGGCT
TTGCTTTTGCGGCCTTG
MXO02069.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8612-PA | 570 | mRpL50-RA | 69..567 | 517..19 | 2495 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:37
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL50-RA | 739 | CG8612-RA | 113..611 | 517..19 | 2495 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7243208..7243635 | 19..446 | 2140 | 100 | Plus |
| 3L | 28110227 | 3L | 7243694..7243765 | 446..517 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:32:37 has no hits.
MXO02069.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:59 Download gff for
MXO02069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8612-PA | 69..570 | 18..517 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:27:59 Download gff for
MXO02069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 113..611 | 19..517 | 100 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:04 Download gff for
MXO02069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 113..611 | 19..517 | 100 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:04 Download gff for
MXO02069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7243694..7243765 | 446..517 | 100 | | Plus |
| 3L | 7243208..7243634 | 19..445 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:27:59 Download gff for
MXO02069.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7236794..7236865 | 446..517 | 100 | | Plus |
| arm_3L | 7236308..7236734 | 19..445 | 100 | <- | Plus |
MXO02069.5prime Sequence
591 bp (591 high quality bases) assembled on 2007-04-02
> MXO02069.5prime
CAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTGCGGGAAGC
CTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCAAAGCCCGT
CAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGCCAAGGGCT
TCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCGCCGAACGT
ATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAGTTGGGGAA
TCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGAGCTGCAGC
ACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCAGCGATGTT
ATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTTGATGCACT
GAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGAGTACGTGC
GATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGGCTTTCCCC
AAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAGTACGAGGG
ACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACC
MXO02069.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8612-PA | 570 | mRpL50-RA | 1..567 | 9..575 | 2835 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:11:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL50-RA | 739 | CG8612-RA | 45..611 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:11:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7243208..7243635 | 575..148 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 7243694..7243803 | 148..39 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:11:32 has no hits.
MXO02069.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:16:59 Download gff for
MXO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8612-PA | 1..570 | 9..576 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:54:22 Download gff for
MXO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:52:15 Download gff for
MXO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:52:15 Download gff for
MXO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7243208..7243634 | 149..575 | 100 | <- | Minus |
| 3L | 7243694..7243803 | 39..148 | 100 | <- | Minus |
| 3L | 7243860..7243895 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:54:22 Download gff for
MXO02069.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7236308..7236734 | 149..575 | 100 | <- | Minus |
| arm_3L | 7236794..7236903 | 39..148 | 100 | <- | Minus |
| arm_3L | 7236960..7236995 | 1..38 | 92 | | Minus |
