MXO02070.5prime Sequence
598 bp (573 high quality bases) assembled on 2007-04-02
> MXO02070.5prime
CAGTCGACATGCTCTGCGAGGATCAGCACATGTCCGTGGAGAACACACCG
CAGAAAGGCTCCGGCAGCCTGAATTCCTCAGCATCCTCCATTTCGATCGA
TGTGAAGCCCACCATGCAGAGCTGGGCCCAGGAGGTCCGCGCGGAGTTTG
GCCACAGTGACGAGGCCTCCAGTTCCTTGAATAGCAGCGCTGCCAGCTGC
GGTTCCTTGGCCAAAAAGGAGACAGCCGACGGTAATCTGGAGTCCAAAGA
TGGCGAGGGCCGGGAGATGGCATTTGAGTTCCTGGATGGCGTCAACGAGG
TAAAGTTCGAGCGCCTGGTCAAGGAGGAGAAGCTAAAAACGCCCTACAAG
CGCCGACACTCGTTCACGCCGCCCAGCAACGAGAACAGTCGCTCCAACAG
TCCAAACAGCAGCAACTCCTCGGCCAACGGAGATGCAGCTGCGCCCAAAG
GCGGCAACAATCCCCATTCGAGGAACTCAAAAAAGTCTGGCAACTTCCGC
GCCCACAAGGAGGAGAAACGGGTGCGCCACAACAGCTACACGTCCTCCAC
CTCATCGTCATCCTCCTACACCGAAGCCGATCCCGCCATCCTAAGTCG
MXO02070.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11886-PA | 831 | Slbp-RA | 1..590 | 9..598 | 2950 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..717 | 7..598 | 2960 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152489..29152924 | 598..163 | 2180 | 100 | Minus |
| 3R | 32079331 | 3R | 29152983..29153141 | 165..7 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 23:18:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3015 | 374..592 | 137 | 57.6 | Plus |
MXO02070.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:00 Download gff for
MXO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11886-PA | 1..590 | 9..598 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:08 Download gff for
MXO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..717 | 1..598 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:41 Download gff for
MXO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..717 | 1..598 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:41 Download gff for
MXO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152489..29152922 | 165..598 | 100 | <- | Minus |
| 3R | 29152984..29153145 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:08 Download gff for
MXO02070.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24978211..24978644 | 165..598 | 100 | <- | Minus |
| arm_3R | 24978706..24978867 | 1..164 | 98 | | Minus |
