MXO02071.3prime Sequence
792 bp (792 high quality bases) assembled on 2007-01-18
> MXO02071.3prime
ATGGTCTAGAAAGCTTGCAAAGCGCTGAATATTACTCAAGTCCTCAAATT
GCTCCAGCTGGTGCAAATTGTCCCACCAGAGTTTCAATCGATGCTGCAGA
ATCAGAGAGAACCAGGGTGTCAGCGGGGCACTAAACTTCGCCACCGCCTC
GTCGATCTTATCGCGGCGCAAGTAGCGCACCTCACTGACCTCGTTGCTAT
TTGGACGCAGCGTCACGTCTTTTTGCAGGAACAGGATGTAGTCTATCTCG
TGCTCGCCCCACACGCCGTCGCCCGTGTCTGCGTAGTGGATGCGGGTCAG
GTAGCGAAAGTCCTGTGGCTGCAGTTCCTCTGTGGGAATGCCCAGTTCGT
AGTTGAGACGTCGTTGAGCGGCCACACGGATGCCCTGTGCGTTGCGCTCC
TGACGTTCCTGTTCGATTTCGTAAAGCGGATGGCTGCAGCACGCGTTGGT
GTAGGTGTTTGGGAAGGTTATCTTGTGAGACGATCGCTTCTGCACTAGCA
TCTCTCCCTGAGAATTGAAGAGAAAAACACTGAAGGCGCGATGGAGCTTA
ACATCATTCGTCTCTGGATGCACACGGTGGCAGTCTGCCTTAGAGGCGGC
CCCAATGGCTTGGTCGTTGGCGTCAACCAGGATGCACTGTTCCTTTAGAG
CGTGAGCCTGCAGAGGATCGTGTACGGCGAACTCCGTGGGCACCTGGCGC
TGATGTTTCTGGCCCACCGCTGTCGTTGAGCAACCGCGCAGCCAGGATAC
GCGGGGCAACAGGAGATTCAAGCGAGAGGCCAACATGTCGAC
MXO02071.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:00:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5919-PA | 771 | CG5919-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:32:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5919-RB | 898 | CG5919-RB | 91..858 | 786..19 | 3840 | 100 | Minus |
| CG5919-RA | 1227 | CG5919-RA | 91..858 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:32:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21270585..21271039 | 473..19 | 2275 | 100 | Minus |
| 3R | 32079331 | 3R | 21270216..21270530 | 786..472 | 1575 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:32:43 has no hits.
MXO02071.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:00 Download gff for
MXO02071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-PA | 1..771 | 15..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:05 Download gff for
MXO02071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..869 | 7..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:10 Download gff for
MXO02071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..869 | 7..786 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:10 Download gff for
MXO02071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21270216..21270530 | 472..786 | 100 | -> | Minus |
| 3R | 21270587..21271050 | 7..471 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:05 Download gff for
MXO02071.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17095938..17096252 | 472..786 | 100 | -> | Minus |
| arm_3R | 17096309..17096772 | 7..471 | 98 | | Minus |
MXO02071.5prime Sequence
463 bp (448 high quality bases) assembled on 2007-04-02
> MXO02071.5prime
CAGTCGACATGTTGGCCTCTCGCTTGAATCTCCTGTTGCCCCGCGTATCC
TGGCTGCGCGGTTGCTCAACGACAGCGGTGGGCCAGAAACATCAGCGCCA
GGTGCCCACGGAGTTCGCCGTACACGATCCTCTGCAGGCTCACGCTCTAA
AGGAACAGTGCATCCTGGTTGACGCCAACGACCAAGCCATTGGGGCCGCC
TCTAAGGCAGACTGCCACCGTGTGCATCCAGAGACGAATGATGTTAAGCT
CCATCGCGCCTTCAGTGTTTTTCTCTTCAATTCTCAGGGAGAGATGCTAG
TGCAGAAGCGATCGTCTCACAAGATAACCTTCCCAAACACCTACACCAAC
GCGTGCTGCAGCCATCCGCTTTACGAAATCGAACAGGAACGTCAGGAGCG
CAACGCACAGGGCATCCGTGTGGCCGCTCAACGACGTCTCAACTACGAAC
TGGGCATTCCCAC
MXO02071.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5919-PA | 771 | CG5919-RA | 1..455 | 9..463 | 2275 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:19:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5919-RB | 898 | CG5919-RB | 91..545 | 9..463 | 2275 | 100 | Plus |
| CG5919-RA | 1227 | CG5919-RA | 91..545 | 9..463 | 2275 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21270216..21270530 | 9..323 | 1575 | 100 | Plus |
| 3R | 32079331 | 3R | 21270585..21270726 | 322..463 | 710 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 23:19:00 has no hits.
MXO02071.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:00 Download gff for
MXO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-PA | 1..455 | 9..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:18:17 Download gff for
MXO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..545 | 9..463 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:06:48 Download gff for
MXO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5919-RA | 91..545 | 9..463 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:06:48 Download gff for
MXO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21270216..21270530 | 9..323 | 100 | -> | Plus |
| 3R | 21270587..21270726 | 324..463 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:18:17 Download gff for
MXO02071.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 17095938..17096252 | 9..323 | 100 | -> | Plus |
| arm_3R | 17096309..17096448 | 324..463 | 100 | | Plus |
