MXO02077.3prime Sequence
582 bp (582 high quality bases) assembled on 2007-01-18
> MXO02077.3prime
ATGGTCTAGAAAGCTTGCTTCAGAACGCAACATCTTCTCCTTTTGGCGCT
GCAGCTTCTTCTTGGAGAGCTTCTTCTTGGCGGGCTCGTCATCAGTGGCC
TTGGAGACAAGCTCCTCCTTCTCGGTGAGGATGACCTCGACGTGGCATGG
CGACGACATGTAGGGATTGATGCGACCATGGGCACGGTACGTGCGGCGAC
GCAGGCACTGAGCGCGGTTCACCTGAATGTGGTGGACGACCAGGCGGTCG
GCATCCAGACCCTTGCAATCAGCGTTGGCCTCGGCGTTGCGCAGCAGCTG
CAACAGGAACTCGGCGGACTTCTTGGGCCAGCGACCCTGCGTGGTCTTCC
ACTGCTTGGCCTGGGCACAACGACCGACTCCTCCGTTGAAGCGACGGAAG
GGCACGCACTCCTTCTGGTCGATGACGGCCTTCAGGTAACGCTGGGCACG
GCGCAGGGGCATGCGCTTGATGGCCTGGGCGGTCTCATGTGTGTTCTTGA
AGTGCACACGTAGATTGGGCCCGCGCGCCTTGCACGACTTGGCCACGTTG
TCTGACTCGCGTGAGTAACGGCCCATGTCGAC
MXO02077.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:01:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3203-PB | 561 | RpL17-RB | 1..558 | 576..19 | 2765 | 99.8 | Minus |
| CG3203-PC | 561 | RpL17-RC | 1..558 | 576..19 | 2765 | 99.8 | Minus |
| CG3203-PD | 561 | RpL17-RD | 1..558 | 576..19 | 2765 | 99.8 | Minus |
| CG3203-PA | 561 | RpL17-RA | 1..558 | 576..19 | 2765 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RpL17-RE | 830 | CG3203-RE | 30..587 | 576..19 | 2775 | 99.8 | Minus |
| RpL17-RA | 837 | CG3203-RA | 37..594 | 576..19 | 2775 | 99.8 | Minus |
| RpL17-RD | 1100 | CG3203-RD | 300..857 | 576..19 | 2775 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:08
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 6741780..6742258 | 19..497 | 2380 | 99.8 | Plus |
| X | 23542271 | X | 6743058..6743138 | 496..576 | 405 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:27:09 has no hits.
MXO02077.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:04 Download gff for
MXO02077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3203-PA | 1..561 | 15..576 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:27 Download gff for
MXO02077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL17-RC | 136..701 | 15..582 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:43 Download gff for
MXO02077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RpL17-RD | 295..860 | 15..582 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:43 Download gff for
MXO02077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 6741776..6742256 | 15..495 | 99 | <- | Plus |
| X | 6743058..6743143 | 496..582 | 95 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:27 Download gff for
MXO02077.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 6635809..6636289 | 15..495 | 99 | <- | Plus |
| arm_X | 6637091..6637176 | 496..582 | 95 | | Plus |
MXO02077.5prime Sequence
792 bp (769 high quality bases) assembled on 2007-04-03
> MXO02077.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGACGGCACTGT
CGCAAACTATCACGGCTACCACATCGTCTTTGCATTAGCCGG
MXO02077.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:08:52 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 19:59:18 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 19:59:16 has no hits.
Blast to na_te.dros performed on 2014-11-28 19:59:17 has no hits.
MXO02077.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:45:19 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-28 20:45:19 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:21:41 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-04 23:21:41 has no hits.
