MXO02080.3prime Sequence
589 bp (589 high quality bases) assembled on 2007-01-18
> MXO02080.3prime
ATGGTCTAGAAAGCTTCTTCATGTGCCGGGTGTTGCCGAAGTTGATGCCC
GACTGGGTGGCGCCCTTGTTCGATCCGTACTGCAGGGAGATGACGTTGGC
GCCGGCGCGCAGCTGCTCGTCGCTGAAGTTCCTCACATTCTTGTCGGCCT
CCTTGGGGCCAATCGATGGCTTGTTGAAGTTGGAGGCCTTGCGACCCAGC
GACTGCAGGCAGATAACCACCGAGTTCAGATTCTGGCGCTCCCACAGGTC
GACGCTCTGGAAGGTCTCCTGGGTGGGGACACCGAAGTTCTTGGCGCACG
CGAGGAAGGCCGAGATGTTCTCCATGCACTTGAAGGCCATTTTGCTCTCG
TTGATCTTCTTGATGGAGCCGGGCTGCAGGGCGTTGGCCAGCTTGCACAG
GATGACGCCATCCTTGAGCACCTCGAAGAAGTTGTCGGTGTCGCCGGATG
TGTTGATGGGCTCCTCGGTGACGGCCTTGATCCACTCGAGGCTCTCCTGG
GCCAGCTCCTCGCTGTACTTGGAGTTAATTTTGCGCTGGGCCTCGGCGGC
AAAACCAGACTTCGCTGCACGGTTGGACGCCATGTCGAC
MXO02080.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14996-PB | 567 | Chd64-RB | 1..564 | 583..20 | 2820 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Chd64-RB | 1429 | CG14996-RB | 180..747 | 583..16 | 2825 | 99.8 | Minus |
| Chd64-RC | 1226 | CG14996-RC | 27..544 | 533..16 | 2560 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 4115304..4115646 | 187..529 | 1715 | 100 | Plus |
| 3L | 28110227 | 3L | 4114971..4115144 | 16..189 | 855 | 99.4 | Plus |
| 3L | 28110227 | 3L | 4122156..4122209 | 530..583 | 270 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:24 has no hits.
MXO02080.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:06 Download gff for
MXO02080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14996-PB | 1..567 | 17..583 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:39 Download gff for
MXO02080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 174..755 | 9..589 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:21 Download gff for
MXO02080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Chd64-RB | 174..755 | 9..589 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:21 Download gff for
MXO02080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 4114963..4115142 | 9..187 | 97 | <- | Plus |
| 3L | 4115305..4115646 | 188..529 | 100 | <- | Plus |
| 3L | 4122156..4122214 | 530..589 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:39 Download gff for
MXO02080.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 4114963..4115142 | 9..187 | 97 | <- | Plus |
| arm_3L | 4115305..4115646 | 188..529 | 100 | <- | Plus |
| arm_3L | 4122156..4122214 | 530..589 | 93 | | Plus |
MXO02080.5prime Sequence
548 bp (469 high quality bases) assembled on 2007-04-02
> MXO02080.5prime
CAGTCGACATGACGTGGAAGAAGCACATGGCTCTGCTGGCCAAGCCATAC
TACTGGGTTAACATACTCCTGGCCATATCGTACCTTTTGGCCAAAAAGAC
CCAGTTCATCTGCACCCGCCTATTTATTCTCGCCGGAGAGGATGAAGCAT
GCGACCTGGACAGTCGTGAGGTGGAAATCTTGTTCTTCCTGCTAATCGTG
GTGATGATACGGTCACGCAAAACGGGCAGTGTCACCATGATTAACTACTT
GGCCTCGTCGTTCCTCTACACCAAAGTGGCCAACGCCATTTTGTGGGCCT
ACGCGGACTTCCGCTACGGCCTGTGCTTTCTGCTTCTATGCGTCCTGGTG
GGCATGGTGCTGCCGGAGCCCTCTTTTCTTTTCCCCCCCCCCATCACCTA
CTTCCGCAACACAAAAAAAGTGGAGGAGGAATTGGCCAGGGACAAGCGAA
CCAGCTGGCTGATCTGCTTCTACCCGGTGTGGAATCCCAGCTGCGTGAAC
TTCGCCCCCGTTTTTGCTGAGCTCTCCGGCCGAAACCAACGGACCGCC
MXO02080.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-PA | 816 | CG11007-RA | 1..365 | 9..373 | 1750 | 99.1 | Plus |
| CG11007-PA | 816 | CG11007-RA | 415..520 | 423..528 | 505 | 99 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11007-RB | 1527 | CG11007-RB | 121..640 | 9..528 | 2255 | 95.6 | Plus |
| CG11007-RA | 1201 | CG11007-RA | 121..640 | 9..528 | 2255 | 95.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19503188..19503707 | 9..528 | 2255 | 95.6 | Plus |
Blast to na_te.dros performed 2014-11-28 19:07:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dtak\R1A2 | 1753 | Dtak\R1A2 TAKR1A2 1753bp | 733..773 | 5..45 | 106 | 73.2 | Plus |
MXO02080.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:06 Download gff for
MXO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-PA | 1..538 | 9..545 | 94 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:34:21 Download gff for
MXO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 114..658 | 1..545 | 94 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:48:28 Download gff for
MXO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11007-RA | 114..658 | 1..545 | 94 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:48:28 Download gff for
MXO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19503181..19503725 | 1..545 | 94 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:34:21 Download gff for
MXO02080.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15390686..15391230 | 1..545 | 94 | | Plus |
