MXO02084.3prime Sequence
334 bp (302 high quality bases) assembled on 2007-01-18
> MXO02084.3prime
ATGGTCTAGAAAGCTTGCCTCCTCCTCCTGAGCTTCTTCTGCCGACTGCT
GCAGAGCGTCGTGCTCCACTATGTGGAAAGTTTCGCCCACGTTTACGGCC
TGAACGGGCAGCAGGTGCCGATGGAGGCGACCGCTTTCGATGGGCGCGTC
TAGCTCAAGGAACTGCTCGAAAATGGAAATGGGCACTCCCTCCGAAGACA
GCAATCCCCGCATGCAATCCTGCCGCTTGTCTCGCAGGTTGTCCAACAAC
TTGTTGCCCTTCTGCACCCGGGCCAGCTTCCGCTCAAGTAGCTTTAAATA
GTCGCTGGGATCCGGGAAGGGGCTCGATTTTCCC
MXO02084.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7866-PA | 462 | CG7866-RA | 145..459 | 334..19 | 1515 | 99.3 | Minus |
| CG7866-PB | 771 | CG7866-RB | 145..458 | 334..20 | 1510 | 99.3 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 245..559 | 334..19 | 1540 | 99.4 | Minus |
| CG42557-RA | 1095 | CG42557-RA | 245..559 | 334..19 | 1540 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 285..19 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 29933531..29933579 | 334..285 | 185 | 96 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:25:26 has no hits.
MXO02084.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:07 Download gff for
MXO02084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 145..462 | 18..334 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:17 Download gff for
MXO02084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 245..559 | 19..334 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:42 Download gff for
MXO02084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 245..559 | 19..334 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:42 Download gff for
MXO02084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933531..29933579 | 285..334 | 96 | -> | Minus |
| 3R | 29933637..29933902 | 19..284 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:17 Download gff for
MXO02084.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759253..25759301 | 285..334 | 96 | -> | Minus |
| arm_3R | 25759359..25759624 | 19..284 | 100 | | Minus |
MXO02084.5prime Sequence
483 bp (483 high quality bases) assembled on 2007-04-02
> MXO02084.5prime
CAGTCGACATGTCACTTGGCAATGCCGATCCCTGGCACTTGAAAAATACT
ATAGTTAAGCAAGGAATCTCCGGGTCCGCGAATAATAGCGAAAGTTTTGA
GGACAACTTCACGCCCTTGCCCTCTGGAAACGAGAGCAACGTCCAAAAGG
ACGGGAAAATCGAGCCCCTTCCGGATTCCAGCGACTATTTAAAGCTACTT
GAGCGGAAGCTGGCCCGGGTGCAGAAGGGCAACAAGTTGTTGGACAACCT
GCGAGACAAGCGGCAGGATTGCATGCGGGGATTGCTGTCTTCGGAGGGAG
TGCCCATTTCCATTTTCGAGCAGTTCCTTGAGCTAGACGCGCCCATCGAA
AGCGGTCGCCTCCATCGGCACCTGCTGCCCGTTCAGGCCGTAAACGTGGG
CGAAACTTTCCACATAGTGGAGCACGACGCTCTGCAGCAGTCGGCAGAAG
AAGCTCAGGAGGAGGAGGCAAGCTTTCTAGACC
MXO02084.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7866-PA | 462 | CG7866-RA | 1..459 | 9..467 | 2295 | 100 | Plus |
| CG7866-PB | 771 | CG7866-RB | 1..458 | 9..466 | 2290 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:08:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG42558-RA | 1095 | CG42558-RA | 99..559 | 7..467 | 2305 | 100 | Plus |
| CG42557-RA | 1095 | CG42557-RA | 99..559 | 7..467 | 2305 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:08:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29933636..29933902 | 201..467 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 29933385..29933579 | 7..201 | 975 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:08:18 has no hits.
MXO02084.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:08 Download gff for
MXO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7866-PA | 1..462 | 9..468 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:27:30 Download gff for
MXO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 7..467 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:10 Download gff for
MXO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG42557-RA | 99..559 | 7..467 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:10 Download gff for
MXO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29933385..29933579 | 7..201 | 100 | -> | Plus |
| 3R | 29933637..29933902 | 202..467 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:27:30 Download gff for
MXO02084.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 25759107..25759301 | 7..201 | 100 | -> | Plus |
| arm_3R | 25759359..25759624 | 202..467 | 100 | | Plus |
