Clone Sequence Records
MXO02085.3prime Sequence
336 bp (336 high quality bases) assembled on 2007-01-18
> MXO02085.3prime
ATGGTCTAGAAAGCTTGCGGTATTGGAACTAAATGCCGCCTGACGGAGCA
GCACATAGATCTTCTCCTTGATCCAATCCTTATTGTAGGGCGCATAGGTA
TTGGTGCTCTTCTGGTAAACCATGCAGCTAATGTCCACCATTGTGTCGAT
GAAATCGAATAGCTGGCTAATGTCATACGTAATGGTCGGAGTGTTTGGAT
TGCGGCGCTTCAGGTGCTCCTCGTAGATCTTGCACACGCCCTCCATGCAC
TCGTTGACGCTCTCGTAGTCACAGTAAGTGCGGGTCTCCGGACGAGCACC
CGGCTGTACCAATAGGATGGTGTGCGACATGTCGAC
MXO02085.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1871-PA | 315 | e(r)-RA | 1..312 | 330..19 | 1560 | 100 | Minus |
| CG1871-PB | 315 | e(r)-RB | 1..312 | 330..19 | 1560 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e(r)-RE | 1332 | CG1871-RE | 312..624 | 331..19 | 1565 | 100 | Minus |
| e(r)-RD | 1191 | CG1871-RD | 171..483 | 331..19 | 1565 | 100 | Minus |
| e(r)-RC | 1199 | CG1871-RC | 179..491 | 331..19 | 1565 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8905067..8905379 | 19..331 | 1565 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:27 has no hits.
MXO02085.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:08 Download gff for
MXO02085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1871-PB | 1..315 | 15..330 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:38:56 Download gff for
MXO02085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 174..496 | 14..336 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:51 Download gff for
MXO02085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 174..496 | 14..336 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:51 Download gff for
MXO02085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8905062..8905383 | 14..336 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:38:56 Download gff for
MXO02085.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8799095..8799416 | 14..336 | 98 | | Plus |
MXO02085.5prime Sequence
336 bp (336 high quality bases) assembled on 2007-04-02
> MXO02085.5prime
CAGTCGACATGTCGCACACCATCCTATTGGTACAGCCGGGTGCTCGTCCG
GAGACCCGCACTTACTGTGACTACGAGAGCGTCAACGAGTGCATGGAGGG
CGTGTGCAAGATCTACGAGGAGCACCTGAAGCGCCGCAATCCAAACACTC
CGACCATTACGTATGACATTAGCCAGCTATTCGATTTCATCGACACAATG
GTGGACATTAGCTGCATGGTTTACCAGAAGAGCACCAATACCTATGCGCC
CTACAATAAGGATTGGATCAAGGAGAAGATCTATGTGCTGCTCCGTCAGG
CGGCATTTAGTTCCAATACCGCAAGCTTTCTAGACC
MXO02085.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:08:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1871-PA | 315 | e(r)-RA | 1..312 | 9..320 | 1560 | 100 | Plus |
| CG1871-PB | 315 | e(r)-RB | 1..312 | 9..320 | 1560 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| e(r)-RE | 1332 | CG1871-RE | 312..624 | 8..320 | 1565 | 100 | Plus |
| e(r)-RD | 1191 | CG1871-RD | 171..483 | 8..320 | 1565 | 100 | Plus |
| e(r)-RC | 1199 | CG1871-RC | 179..491 | 8..320 | 1565 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 8905067..8905379 | 320..8 | 1565 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 23:33:04 has no hits.
MXO02085.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:09 Download gff for
MXO02085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1871-PB | 1..315 | 9..324 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:19 Download gff for
MXO02085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 173..496 | 1..325 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:28 Download gff for
MXO02085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| e(r)-RC | 173..496 | 1..325 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:28 Download gff for
MXO02085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 8905062..8905387 | 1..325 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:19 Download gff for
MXO02085.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 8799095..8799420 | 1..325 | 98 | | Minus |
