Clone MXO02090 Report

Search the DGRC for MXO02090

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:90
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptnero-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02090.3prime Sequence

771 bp (760 high quality bases) assembled on 2007-01-18

> MXO02090.3prime
ATGGTCTAGAAAGCTTGCCTTGGTCGCGTCTAGTTTGGCTAGGCCGTCGG
CATATTGGAACTCCGGACTGTTCTCGTACTCGCACATGTCCAGGGCGATG
ACGCAGCTCTCCTTGACCACGCGCTTGTCGTCCTCGGCGTAGCGGTTCAA
GATCTGAATGCAGTCCTCTGTGGCGATGGCGCCAAGGGCCTCGGCACACT
CGTGACGCACCATTTCGTTTTCCAGGCGATCCTCCAGATTCTCTTGAAGG
AAGGGAATGCTGCAGGGTTCTTGCAGCTGGCCCAGTACGAAGGCCACCTC
GTGGCGGAAGAGGGCGGAAGAGTCCTTAAGTCCCTCGGCAATGGCCAAGA
CACTCTCTTCGGTGCGCAGATTGCGCAGGCTGAACATGGCCCTATATCGA
TCGAACAGGCTCTGCTGGGCATCCAGATAGATGGCCTTCAGCTCGGTGAC
GCTCTTGTCGCCCGCAGTTGGCGGTGAGGGATCAACGGAGGCGTAAGGGT
TGCTGTCATCTACCTTTTGGCCACTCTGCAGCCAGCGGACGCGGTCCAGA
GCAATGGCACATGTTTCGCCCACCTCCACTACCGGATCTTGTTTGTACTC
CTCCAGAATTGGCAGCACATCTGGATGACCAATGGCGCCCATGGCCTCCG
CAGCCTCGTGGCGCACCATCGGCTCCTGGGTGGTGTCCTTTAGCACCTTG
GTGAGGATGTCTAACGCCTGTGCGTCCTGCATCTGACCCAAGCAGTAGGC
CAGCTCATGTTTGAGAAGGGC

MXO02090.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG2245-PA 909 l(3)s1921-RA 154..906 771..19 3740 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:17
Subject Length Description Subject Range Query Range Score Percent Strand
nero-RA 1114 CG2245-RA 237..989 771..19 3750 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:15
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31746570..31747322 19..771 3750 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 21:31:16 has no hits.

MXO02090.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:10 Download gff for MXO02090.3prime
Subject Subject Range Query Range Percent Splice Strand
CG2245-PA 154..909 16..771 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:39 Download gff for MXO02090.3prime
Subject Subject Range Query Range Percent Splice Strand
nero-RA 237..989 19..771 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:10 Download gff for MXO02090.3prime
Subject Subject Range Query Range Percent Splice Strand
nero-RA 237..989 19..771 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:10 Download gff for MXO02090.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31746570..31747322 19..771 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:39 Download gff for MXO02090.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27572292..27573044 19..771 99   Plus

MXO02090.5prime Sequence

732 bp (603 high quality bases) assembled on 2007-04-02

> MXO02090.5prime
CAGTCGACATGGTTTCGCAGCAGCAAATCGAGGCCATTGGAGGCGTTCTG
AACAACAAGGAACGCCCACTGAAAGAGCGCTTTCGAGCCCTCTTCACGCT
GAAGAACATCGGCGGAGGAGCGGCCATCGAGGCGATCAGCAAAGCCTTTG
ACGATGATTCGGCCCTTCTCAAACATGAGCTGGCCTACTGCTTGGGTCAG
ATGCAGGACGCACAGGCGTTAGACATCCTCACCAAGGTGCTAAAGGACAC
CACCCAGGAGCCGATGGTGCGCCACGAGGCTGCGGAGGCCATGGGCGCCA
TTGGTCATCCAGATGTGCTGCCAATTCTGGAGGAGTACAAACAAGATCCG
GTAGTGGAGGTGGCCGAAACATGTGCCATTGCTCTGGACCGCGTCCGCTG
GCTGCAGAGTGGCCAAAAGGTAGATGACAGCAACCCTTACGCCTCCGTTG
ATCCCTCACCGCCAACTGCGGGCGACAAGAGCGTCACCGAGCTGAAGGCC
ATCTATCTGGATGCCCAGCAGAGCCTGTTCGATCGATATAGGGCCATGTT
CAGCCTGCGCAATCTGCGCACCGAAGAGAGTGTCTTGGCCATTGCCGAGG
GACTTATGGACTCTTCCGCCCTCTTCCGCCACGAGGTGGCCTTCGTACTG
GGCCAGCTGCAAGAACCCTGCAGCATTCCCTTCCTTCAAGAGAATCTGGA
GGATCGCCTGAAAAACGAAATGGTGCGTCACG

MXO02090.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG2245-PA 909 l(3)s1921-RA 1..724 9..732 3570 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
nero-RA 1114 CG2245-RA 84..807 9..732 3590 99.7 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:40
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31746752..31747475 732..9 3590 99.7 Minus
Blast to na_te.dros performed on 2014-11-28 21:04:40 has no hits.

MXO02090.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:10 Download gff for MXO02090.5prime
Subject Subject Range Query Range Percent Splice Strand
CG2245-PA 1..724 9..732 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:53:29 Download gff for MXO02090.5prime
Subject Subject Range Query Range Percent Splice Strand
nero-RA 77..807 1..732 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:47 Download gff for MXO02090.5prime
Subject Subject Range Query Range Percent Splice Strand
nero-RA 77..807 1..732 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:47 Download gff for MXO02090.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31746752..31747482 1..732 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:53:29 Download gff for MXO02090.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27572474..27573204 1..732 99   Minus