MXO02091.3prime Sequence
775 bp (749 high quality bases) assembled on 2007-01-18
> MXO02091.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGATCGTGTTGGCATTGATGAACTGCA
CGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGCG
TGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGGC
ATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGCA
GCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGATC
GCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCGG
TGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAGG
CCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCACC
AGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGCA
CAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACCG
GCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTGG
CTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGCA
CTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAGC
CTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAANG
TGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCTG
CGAATCACCTGTATGGGAATTCTTT
MXO02091.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 141..897 | 775..19 | 3766 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:39
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 221..977 | 775..19 | 3774 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:37
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 652..303 | 1750 | 100 | Minus |
X | 23542271 | X | 1941124..1941408 | 303..19 | 1425 | 100 | Minus |
X | 23542271 | X | 1940527..1940652 | 775..650 | 619 | 99.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:28:38 has no hits.
MXO02091.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:10 Download gff for
MXO02091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 141..900 | 18..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:03 Download gff for
MXO02091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 292..1052 | 13..775 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:57 Download gff for
MXO02091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 221..981 | 13..775 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:57 Download gff for
MXO02091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1940710..1941056 | 304..650 | 100 | -> | Minus |
X | 1941124..1941412 | 13..303 | 98 | | Minus |
X | 1940527..1940651 | 651..775 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:03 Download gff for
MXO02091.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834560..1834684 | 651..775 | 99 | -> | Minus |
arm_X | 1834743..1835089 | 304..650 | 100 | -> | Minus |
arm_X | 1835157..1835445 | 13..303 | 98 | | Minus |
MXO02091.5prime Sequence
857 bp (798 high quality bases) assembled on 2007-04-02
> MXO02091.5prime
CAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCAGCGGAAAG
AGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGCGGCAGGAA
GGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGGTTTTGGAA
AGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTACGTAGCGAT
CTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTGGTCATCTT
GGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTACTGCATGT
CCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCATACCCCAG
GAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGATGAACTGCC
TGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGTTCCCTACA
CCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGCCGCAGAGC
AACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAGGACACGCT
CGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCCACTGCCAC
CCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACTACCTGTTC
GAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTCGGCGCCGT
CAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAGAAATCCCG
TGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCCTGCGCCAG
AAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCCACTCCGCT
GGGAGCA
MXO02091.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:04
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-PA | 900 | CG3587-RA | 1..844 | 9..852 | 4220 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3587-RA | 1105 | CG3587-RA | 80..924 | 8..852 | 4225 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 1940708..1941057 | 272..621 | 1750 | 100 | Plus |
X | 23542271 | X | 1940386..1940652 | 8..274 | 1335 | 100 | Plus |
X | 23542271 | X | 1941124..1941355 | 621..852 | 1160 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:22:00 has no hits.
MXO02091.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:11 Download gff for
MXO02091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-PA | 1..847 | 9..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:42 Download gff for
MXO02091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 151..998 | 8..856 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:19 Download gff for
MXO02091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3587-RA | 80..927 | 8..856 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:19 Download gff for
MXO02091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 1940386..1940651 | 8..273 | 100 | -> | Plus |
X | 1940710..1941056 | 274..620 | 100 | -> | Plus |
X | 1941124..1941358 | 621..856 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:42 Download gff for
MXO02091.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1834419..1834684 | 8..273 | 100 | -> | Plus |
arm_X | 1834743..1835089 | 274..620 | 100 | -> | Plus |
arm_X | 1835157..1835391 | 621..856 | 99 | | Plus |