Clone MXO02091 Report

Search the DGRC for MXO02091

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:20
Well:91
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG3587-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02091.3prime Sequence

775 bp (749 high quality bases) assembled on 2007-01-18

> MXO02091.3prime
ATGGTCTAGAAAGCTTGCGCAGCCGATCGTGTTGGCATTGATGAACTGCA
CGAACAAGTGCGGCACCTGCTCCAGCGGAGTGGGTGACGTCTGGCTGGCG
TGGCACGTGCTCGTGATGAACTTCTGGCGCAGGCGGTTCAGCTGGAGGGC
ATTCATCGAAGTGGCGACCTTCACGGGATTTCTGCTCCCTGGGATGCGCA
GCTGGCCGAAGGCCTTGATCTTGACGGCGCCGAGGATCTCCTTGATGATC
GCCTGCACGATTTTGTCCAGTTCGAACAGGTAGTTGGTTGTTCCCAGCGG
TGCATTATAAGTACTCTGGTTGGGTGGCAGTGGCTGGGACTCGTACAAGG
CCTTGTAGATGGCCTCCATGTCGAGCGTGTCCTTGGGCAAGACTACCACC
AGCGGACTGTCCCAACGGTTGTTGCTCTGCGGCTCCTCGTAGCGCTGGCA
CAGAGCATCAAAAGTCTCTCTGGTGTAGGGAACATCCGAGTTGTCCACCG
GCTGAACTCTTTCACTGTCGCCAGGCAGTTCATCCGGCGCCGTTCTTTGG
CTATTAAAGGTCCACGCCTCCTCCTGGGGTATGCAGGTAAACACAGTGCA
CTGGGTGGTCCTTGACACCTTGGACATGCAGTACAATTCGTAGCGGTAGC
CTTTGATGTAGTTCCCGGCGTCCAAGATGACCAGATCCTCCTGGTTAANG
TGACGCGAGGCTTCCGACTTAAGATCGCTACGTACCACCTTCTCCTTCTG
CGAATCACCTGTATGGGAATTCTTT

MXO02091.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:02:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 141..897 775..19 3766 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:28:39
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 221..977 775..19 3774 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:37
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 652..303 1750 100 Minus
X 23542271 X 1941124..1941408 303..19 1425 100 Minus
X 23542271 X 1940527..1940652 775..650 619 99.2 Minus
Blast to na_te.dros performed on 2014-11-28 19:28:38 has no hits.

MXO02091.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:10 Download gff for MXO02091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 141..900 18..775 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:03 Download gff for MXO02091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 292..1052 13..775 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:19:57 Download gff for MXO02091.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 221..981 13..775 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:19:57 Download gff for MXO02091.3prime
Subject Subject Range Query Range Percent Splice Strand
X 1940710..1941056 304..650 100 -> Minus
X 1941124..1941412 13..303 98   Minus
X 1940527..1940651 651..775 99 -> Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:03 Download gff for MXO02091.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834560..1834684 651..775 99 -> Minus
arm_X 1834743..1835089 304..650 100 -> Minus
arm_X 1835157..1835445 13..303 98   Minus

MXO02091.5prime Sequence

857 bp (798 high quality bases) assembled on 2007-04-02

> MXO02091.5prime
CAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCAGCGGAAAG
AGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGCGGCAGGAA
GGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGGTTTTGGAA
AGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTACGTAGCGAT
CTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTGGTCATCTT
GGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTACTGCATGT
CCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCATACCCCAG
GAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGATGAACTGCC
TGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGTTCCCTACA
CCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGCCGCAGAGC
AACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAGGACACGCT
CGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCCACTGCCAC
CCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACTACCTGTTC
GAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTCGGCGCCGT
CAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAGAAATCCCG
TGAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCCTGCGCCAG
AAGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCCACTCCGCT
GGGAGCA

MXO02091.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-11 12:09:04
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-PA 900 CG3587-RA 1..844 9..852 4220 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:22:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3587-RA 1105 CG3587-RA 80..924 8..852 4225 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:22:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 1940708..1941057 272..621 1750 100 Plus
X 23542271 X 1940386..1940652 8..274 1335 100 Plus
X 23542271 X 1941124..1941355 621..852 1160 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:22:00 has no hits.

MXO02091.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:11 Download gff for MXO02091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-PA 1..847 9..856 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:29:42 Download gff for MXO02091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 151..998 8..856 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:20:19 Download gff for MXO02091.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3587-RA 80..927 8..856 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:20:19 Download gff for MXO02091.5prime
Subject Subject Range Query Range Percent Splice Strand
X 1940386..1940651 8..273 100 -> Plus
X 1940710..1941056 274..620 100 -> Plus
X 1941124..1941358 621..856 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:29:42 Download gff for MXO02091.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1834419..1834684 8..273 100 -> Plus
arm_X 1834743..1835089 274..620 100 -> Plus
arm_X 1835157..1835391 621..856 99   Plus