MXO02096.3prime Sequence
774 bp (761 high quality bases) assembled on 2007-01-18
> MXO02096.3prime
ATGGTCTAGAAAGCTTGCACACTGTCCATCGGGAGACTCGGTTAGAATGT
GCTTATATCCATTGCTGCCCAGATACATGTGCTCGCGTTGGAAACGATAG
GGTATGGCTCCTGGAGCTGGACATGGTATGGCCACAGTGGCAATCTCTCG
AAGCTTATTCATGGTGCGTAGACTCTGGTAGAAGCTATGCATCACATACC
ACTTGCAGTAATCCATGCAGATCAAGATGTAGCAAATGATAAAGTAGGGC
ACTTGACCACCCAGCAATTGCACGATTTTTGTATCCCTCAGCATGAAGAC
CAGTGCCCCCAAACCAATCATTAATAGGAACTCCACAACCAGCCAGGGTA
TGATTAGGCCCGGCCGATTTTTGAAGACTCCGAAAAACAGGAATATGGCA
CTCAGGGCGTAGGTACCCGCGATACCAGCCATCACGTAGAGCAGATTCTC
CGTGGCGACGGCCAATTGGGCAGCGGTTTGCAGGCGAAGATCGTTGTGAA
AGGGCGACATGTTGTAGAAACCATTGTCCTTCTGGTCCAAGATGTCCAGC
TCCAGCACCTCGCACATCTGTTCGGCATGCGCCAGTCCCAGGAGAACCAG
GAAAAGGGCGCAGTGGGAGATTAACAACTGGTAGATGCTCGTCAAGAGCG
CCGTGGTCCTGAGGTTCTTGGGCGATACGGGCGCCATCAGCATTTCCCAG
CTGCGGCGACAGCAGTTTTTCCATTTGCATCCTGCGGCGGATTGGCCGCT
GACCGTTGGCAGCAGCATGTCGAC
MXO02096.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1079-PA | 753 | CG1079-RA | 1..750 | 768..19 | 3750 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:17:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fie-RB | 1443 | CG1079-RB | 116..865 | 768..19 | 3750 | 100 | Minus |
| Fie-RA | 1600 | CG1079-RA | 273..1022 | 768..19 | 3750 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:17:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3893532..3893914 | 625..243 | 1915 | 100 | Minus |
| 3L | 28110227 | 3L | 3892846..3892993 | 768..621 | 725 | 99.3 | Minus |
| 3L | 28110227 | 3L | 3893978..3894114 | 242..106 | 685 | 100 | Minus |
| 3L | 28110227 | 3L | 3894169..3894255 | 105..19 | 435 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:17:36 has no hits.
MXO02096.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:12 Download gff for
MXO02096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1079-PA | 1..753 | 15..768 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:47:11 Download gff for
MXO02096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 268..1025 | 15..774 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:19 Download gff for
MXO02096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 268..1025 | 15..774 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:19 Download gff for
MXO02096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3892841..3892989 | 625..774 | 98 | -> | Minus |
| 3L | 3893533..3893914 | 243..624 | 100 | -> | Minus |
| 3L | 3893978..3894114 | 106..242 | 100 | -> | Minus |
| 3L | 3894169..3894258 | 15..105 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:47:11 Download gff for
MXO02096.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3892841..3892989 | 625..774 | 98 | -> | Minus |
| arm_3L | 3893533..3893914 | 243..624 | 100 | -> | Minus |
| arm_3L | 3893978..3894114 | 106..242 | 100 | -> | Minus |
| arm_3L | 3894169..3894258 | 15..105 | 97 | | Minus |
MXO02096.5prime Sequence
774 bp (774 high quality bases) assembled on 2007-04-04
> MXO02096.5prime
CAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCGCAGGATGC
AAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATGGCGCCCGT
ATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCATCTACCAGT
TGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGACTGGCGCAT
GCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGACCAGAAGGA
CAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCGCCTGCAAA
CCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACGTGATGGCT
GGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTTTTCGGAGT
CTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGTGGAGTTCC
TATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGGATACAAAA
ATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATTTGCTACAT
CTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAGCTTCTACC
AGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTGTGGCCATA
CCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGCGAGCACAT
GTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTCTCCCGATG
GACAGTGTGCAAGCTTTCTAGACC
MXO02096.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-11 12:09:10 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:23
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fie-RB | 1443 | CG1079-RB | 116..865 | 9..758 | 3750 | 100 | Plus |
| Fie-RA | 1600 | CG1079-RA | 273..1022 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3893532..3893914 | 152..534 | 1915 | 100 | Plus |
| 3L | 28110227 | 3L | 3892846..3892993 | 9..156 | 725 | 99.3 | Plus |
| 3L | 28110227 | 3L | 3893978..3894114 | 535..671 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 3894169..3894255 | 672..758 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:55:22 has no hits.
MXO02096.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:50 Download gff for
MXO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:54 Download gff for
MXO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:54 Download gff for
MXO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| 3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
| 3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| 3L | 3894169..3894258 | 672..762 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:50 Download gff for
MXO02096.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| arm_3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
| arm_3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| arm_3L | 3894169..3894258 | 672..762 | 97 | | Plus |
