MXO02101.5prime Sequence
789 bp (668 high quality bases) assembled on 2007-01-19
> MXO02101.5prime
CAGTCGACATGACGGACGTATCGCATGAACTGGGCGCCTTGCGCTTCGTG
GTGGACTCACCACTGTCCTCCAAGGTGGCCATGTTCAACAACCAGGCCAC
GCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTTCCCAGGACGGACGCG
CCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAGTATGGAAAACCACTG
GCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGCCAACATCCACGTGAT
GAAGGAGATGCTGGAGCTCTGCCAGATCATCAATTCGGAGGGCTACGACG
TCAAGGACGAGCCCACTATGCGTGTGATCCCCTTCGGCGAACTTTTTAAT
ATCTATAACTACATATCCGACAAGGTGGTGGGCATCCTGCTGCGGGCCCG
CAAACACAAGTTGGTAGACTTCGAGGGCGAGATGTTGTACCAGCGGAGGG
ACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATCAAGGAAATACGCAAT
GAGATGGAGGCCAAGATTGAAGACATCAAGAGGGCGGCTAGTCCAGCGCC
TCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTGCTCACGAACAAAAAC
TGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAGTCCGCCAAGTCGAAG
TCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGTTCCTGCGCCTGCTGC
AGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTGCAGAACCTGCTCCTG
TGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCGTCTA
MXO02101.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3630-PA | 1116 | CG3630-RA | 1..781 | 9..789 | 3880 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3630-RD | 1672 | CG3630-RD | 203..984 | 8..789 | 3895 | 99.9 | Plus |
| CG3630-RC | 1786 | CG3630-RC | 317..1098 | 8..789 | 3895 | 99.9 | Plus |
| CG3630-RA | 1948 | CG3630-RA | 479..1260 | 8..789 | 3895 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2171155..2171593 | 351..789 | 2180 | 99.8 | Plus |
| X | 23542271 | X | 2170788..2171085 | 53..350 | 1490 | 100 | Plus |
| X | 23542271 | X | 2168188..2168234 | 8..54 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:18:05 has no hits.
MXO02101.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:12 Download gff for
MXO02101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-PA | 1..780 | 9..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:17 Download gff for
MXO02101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1259 | 1..788 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:32 Download gff for
MXO02101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1259 | 1..788 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:32 Download gff for
MXO02101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2168184..2168233 | 1..53 | 94 | -> | Plus |
| X | 2170789..2171085 | 54..350 | 100 | -> | Plus |
| X | 2171155..2171592 | 351..788 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:17 Download gff for
MXO02101.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2062217..2062266 | 1..53 | 94 | -> | Plus |
| arm_X | 2064822..2065118 | 54..350 | 100 | -> | Plus |
| arm_X | 2065188..2065625 | 351..788 | 99 | | Plus |
