MXO02102.5prime Sequence
510 bp (510 high quality bases) assembled on 2007-01-19
> MXO02102.5prime
CAGTCGACATGCCCAGCATCAAGTTGCAATCTTCGGATGAGGAGATCTTT
GACACGGATATCCAGATCGCCAAGTGCTCCGGCACTATCAAGACCATGCT
GGAGGACTGCGGCATGGAGGACGATGAGAATGCCATTGTGCCGTTGCCCA
ATGTGAATTCGACGATTCTTCGCAAGGTGCTTACCTGGGCTCACTACCAC
AAGGACGACCCCCAGCCAACGGAGGATGATGAGAGCAAGGAGAAGCGCAC
AGACGACATTATCTCATGGGATGCAGATTTCCTAAAAGTCGACCAGGGCA
CACTGTTTGAGCTGATATTGGCAGCGAACTATCTGGACATTAAGGGCCTT
CTGGAGCTCACCTGCAAGACTGTTGCAAACATGATTAAGGGAAAGACTCC
CGAGGAAATACGCAAGACCTTCAACATTAAGAAGGACTTTTCGCCCGCCG
AGGAGGAGCAGGTGCGCAAGGAGAACGAGTGGTGCGAGGAGAAGGCAAGC
TTTCTAGACC
MXO02102.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16983-PE | 489 | skpA-RE | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PF | 489 | skpA-RF | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PC | 489 | skpA-RC | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PB | 489 | skpA-RB | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PG | 489 | skpA-RG | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PD | 489 | skpA-RD | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PA | 489 | skpA-RA | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG16983-PH | 489 | skpA-RH | 1..486 | 9..494 | 2430 | 100 | Plus |
| CG8881-PA | 486 | skpB-RA | 439..479 | 450..490 | 155 | 95.1 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 9..494 | 2430 | 100 | Plus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 9..494 | 2430 | 100 | Plus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 9..494 | 2430 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 9..494 | 2430 | 100 | Plus |
| 2R | 25286936 | 2R | 12139446..12139797 | 490..139 | 440 | 75 | Minus |
| X | 23542271 | X | 19812810..19813228 | 12..427 | 260 | 71.4 | Plus |
| X | 23542271 | X | 19816453..19816565 | 315..427 | 250 | 81.4 | Plus |
| X | 23542271 | X | 19816147..19816292 | 12..157 | 235 | 77.4 | Plus |
| 2L | 23513712 | 2L | 17581473..17581534 | 12..73 | 220 | 90.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:46 has no hits.
MXO02102.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:13 Download gff for
MXO02102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16983-PE | 1..489 | 9..498 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:14 Download gff for
MXO02102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 683..1174 | 9..500 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:11 Download gff for
MXO02102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 298..789 | 9..500 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:11 Download gff for
MXO02102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657110..657601 | 9..500 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:14 Download gff for
MXO02102.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551143..551634 | 9..500 | 99 | | Plus |
MXO02102.3prime Sequence
510 bp (510 high quality bases) assembled on 2007-01-19
> MXO02102.3prime
ATGGTCTAGAAAGCTTGCCTTCTCCTCGCACCACTCGTTCTCCTTGCGCA
CCTGCTCCTCCTCGGCGGGCGAAAAGTCCTTCTTAATGTTGAAGGTCTTG
CGTATTTCCTCGGGAGTCTTTCCCTTAATCATGTTTGCAACAGTCTTGCA
GGTGAGCTCCAGAAGGCCCTTAATGTCCAGATAGTTCGCTGCCAATATCA
GCTCAAACAGTGTGCCCTGGTCGACTTTTAGGAAATCTGCATCCCATGAG
ATAATGTCGTCTGTGCGCTTCTCCTTGCTCTCATCATCCTCCGTTGGCTG
GGGGTCGTCCTTGTGGTAGTGAGCCCAGGTAAGCACCTTGCGAAGAATCG
TCGAATTCACATTGGGCAACGGCACAATGGCATTCTCATCGTCCTCCATG
CCGCAGTCCTCCAGCATGGTCTTGATAGTGCCGGAGCACTTGGCGATCTG
GATATCCGTGTCAAAGATCTCCTCATCCGAAGATTGCAACTTGATGCTGG
GCATGTCGAC
MXO02102.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG16983-PE | 489 | skpA-RE | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PF | 489 | skpA-RF | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PC | 489 | skpA-RC | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PB | 489 | skpA-RB | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PG | 489 | skpA-RG | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PD | 489 | skpA-RD | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PA | 489 | skpA-RA | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG16983-PH | 489 | skpA-RH | 1..486 | 504..19 | 2430 | 100 | Minus |
| CG8881-PA | 486 | skpB-RA | 439..479 | 63..23 | 155 | 95.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| SkpA-RI | 826 | CG16983-RI | 37..522 | 504..19 | 2430 | 100 | Minus |
| SkpA-RH | 1544 | CG16983-RH | 755..1240 | 504..19 | 2430 | 100 | Minus |
| SkpA-RA | 1087 | CG16983-RA | 298..783 | 504..19 | 2430 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 657110..657595 | 504..19 | 2430 | 100 | Minus |
| 2R | 25286936 | 2R | 12139446..12139797 | 23..374 | 440 | 75 | Plus |
| X | 23542271 | X | 19812810..19813228 | 501..86 | 260 | 71.4 | Minus |
| X | 23542271 | X | 19816453..19816565 | 198..86 | 250 | 81.4 | Minus |
| X | 23542271 | X | 19816147..19816292 | 501..356 | 235 | 77.4 | Minus |
| 2L | 23513712 | 2L | 17581473..17581534 | 501..440 | 220 | 90.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:30 has no hits.
MXO02102.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:13 Download gff for
MXO02102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG16983-PE | 1..489 | 15..504 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:00 Download gff for
MXO02102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| skpA-RD | 676..1174 | 13..510 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:13 Download gff for
MXO02102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| SkpA-RA | 291..789 | 13..510 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:13 Download gff for
MXO02102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 657103..657601 | 13..510 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:00 Download gff for
MXO02102.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 551136..551634 | 13..510 | 98 | | Minus |
