MXO02103.5prime Sequence
863 bp (669 high quality bases) assembled on 2007-01-19
> MXO02103.5prime
CAGTCGACATGGCCGCCAACAACTTGCGACAAATCCCGCTGACCTGCAGT
GGCCACACGCGACCCGTGGTCCACCTGGACTTCAGCGACATCTGCGACGC
CGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCAGCCCGATGCTGCGGC
ACGGCGACACCGGCGACTGGGTGGGCACCTTCGAGGGACACAAGGGCGCC
GTGTGGAACGCCACGCTGAACCGAAATGCCACCCTGGCCGCCTCCGGAGC
GGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGACCGGGGCCGAGATAC
ACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTGGCCTTCGACAGGGAT
TCCGAGAACATAGTGACTGGCAGCAACGAGAAGCTGGTGCGGGTCTTCAA
CCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACGCCGGACATACGGGGG
CCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAGTGCATCATCTCGGCG
GCCGAGGACAAGACGGTGCGCCTCTGGGACCGCATGACGGGCATCGAGGT
GCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCCTAGAGATCTCCAGCG
ACAACCACATACTGACCATATCGCACGGCTCCTCGATTAGCTTCTGGGAG
ATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGTGCCGACGAACGTGGC
GTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTGTTTGTGGCGGCGAGG
ACTTTAAGATGTACAAATTCGACTACATCACAGGAAACGAAATTGAATCT
TTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAAGTTCAGCCGGATGGC
GAACTCTATGCCA
MXO02103.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3957-PA | 987 | CG3957-RA | 1..856 | 9..863 | 4240 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:27:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wmd-RB | 1661 | CG3957-RB | 433..1289 | 8..863 | 4260 | 99.9 | Plus |
| wmd-RA | 1606 | CG3957-RA | 378..1234 | 8..863 | 4260 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:27:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23545326..23545993 | 795..128 | 3340 | 100 | Minus |
| 2R | 25286936 | 2R | 23547490..23547611 | 129..8 | 610 | 100 | Minus |
| 2R | 25286936 | 2R | 23545195..23545264 | 863..795 | 300 | 98.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:27:28 has no hits.
MXO02103.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:13 Download gff for
MXO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3957-PA | 1..855 | 9..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:35 Download gff for
MXO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wmd-RA | 372..1233 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:03:53 Download gff for
MXO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wmd-RA | 372..1233 | 1..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:03:53 Download gff for
MXO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23545196..23545263 | 796..862 | 98 | <- | Minus |
| 2R | 23545326..23545991 | 130..795 | 100 | <- | Minus |
| 2R | 23547490..23547617 | 1..129 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:35 Download gff for
MXO02103.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19432719..19432786 | 796..862 | 98 | <- | Minus |
| arm_2R | 19432849..19433514 | 130..795 | 100 | <- | Minus |
| arm_2R | 19435013..19435140 | 1..129 | 97 | | Minus |
