Clone MXO02106 Report

Search the DGRC for MXO02106

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:6
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG7945-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02106.3prime Sequence

546 bp (508 high quality bases) assembled on 2007-01-19

> MXO02106.3prime
ATGGTCTAGAAAGCTTGCATGGCTAACAGTTTGCTTATTCAGATAAGCCA
TTAAGGCCTGGAGCCGCTTCTTGATGTTCTTCTGATCGTCCAGAGTGCAG
CCAAGCAAAACGCTCTCGAACTTCTTGTCGACCGGCCCAACATCGGCCTC
GGGCACGGTGTCCATGTGTCCGGATGGATCCATTGAGCTGCTGCAGCAGG
CGTTTAAGTAAAACTGGCATCGTTGGCGTCCGATCACGGGATCACCCATC
TTGATCATGCTGTCAATCAATACATTTATCTGGCTAAGGGAATCCTCCTG
AGAGTTGTCCCGAACAGTGCGCACACGCAGCTCCACGGTGGCCAAGCGAG
AGCTCACCCGTTGTAGGTACAAAATGATCTCCTCTCGTTCAGCTTCGCTC
ATGTTCTGCATCATTTCGTTGCTCTTGATCAGATCCATGGACATCAGAAG
GTAGTCTTTCTTCTCCTGCANGTTGAGTGCATCCTTGCGCAGCTTCTCCA
CACGTGCATCCAAACTATCCAGTATGGTGACAAATCTCTCGCTGGC

MXO02106.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:33
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PB 747 CG7945-RB 217..744 546..19 2621 99.8 Minus
CG7945-PA 789 CG7945-RA 259..786 546..19 2621 99.8 Minus
CG7945-PC 429 CG7945-RC 1..426 444..19 2130 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:47:50
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 813..1340 546..19 2629 99.8 Minus
CG7945-RB 1275 CG7945-RB 637..1164 546..19 2629 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:48
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 19..394 1880 100 Plus
3L 28110227 3L 15522360..15522504 393..537 714 99.3 Plus
Blast to na_te.dros performed on 2014-11-28 21:47:49 has no hits.

MXO02106.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:15 Download gff for MXO02106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 259..789 15..546 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:27 Download gff for MXO02106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 637..1169 11..546 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:16 Download gff for MXO02106.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RB 637..1169 11..546 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:16 Download gff for MXO02106.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 15521817..15522195 11..392 98 <- Plus
3L 15522360..15522507 393..541 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:27 Download gff for MXO02106.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514917..15515295 11..392 98 <- Plus
arm_3L 15515460..15515607 393..541 97   Plus

MXO02106.5prime Sequence

810 bp (725 high quality bases) assembled on 2007-01-19

> MXO02106.5prime
CAGTCGACATGGAAGTTGATGCGCCAACAACGCAGGAAACCAGTGACACT
CATCATCATCACCATAGTACTTATCACCAGCAGCTGCATCAGATCTCGCC
CAGCGATTACCACTCGGAGGCATCCATGAATTTTGATCATTTGCAAGACC
TGAGGGCCGATGCCATGGCCTCCTCATCCCCATCCGGATCCGGAGGTGGT
GGCAATGGCGGGAACAGCTCCTACGGACTCGTCGACGATAGTAGAGCTCT
GGACAGACCATTTAACGCCAGCGAGAGATTTGTCACCATACTGGATAGTT
TGGATGCACGTGTGGAGAAGCTGCGCAAGGATGCACTCAACCTGCAGGAG
AAGAAAGACTACCTTCTGATGTCCATGGATCTGATCAAGAGCAACGAAAT
GATGCAGAACATGAGCGAAGCTGAACGAGAGGAGATCATTTTGTACCTAC
AACGGGTGAGCTCTCGCTTGGCCACCGTGGAGCTGCGTGTGCGCACTGTT
CGGGACAACTCTCAGGAGGATTCCCTTAGCCAGATAAATGTATTGATTGA
CAGCATGATCAAGATGGGTGATCCCGTGATCGGACGCCAACGATGCCAGT
TTTACTTAAACGCCTGCTGCAGCAGCTCAATGGATCCATCCGGACACATG
GACACCGTGCCCGAGGCCGATGTTGGGCCGGTCGACAAGAAGTTCGAGAG
CGTTTTGCTTGGCTGCACTCTGGACGATCAGAAGAACATCAAGAAGCGGC
TCCAGGCCTTAATGGCTTATCTGAATAAGCAAACTGTTAGCCATGCAAGC
TTTCTAGACC

MXO02106.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:41
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-PA 789 CG7945-RA 1..786 9..794 3930 100 Plus
CG7945-PB 747 CG7945-RB 205..744 255..794 2700 100 Plus
CG7945-PC 429 CG7945-RC 1..426 369..794 2130 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:05
Subject Length Description Subject Range Query Range Score Percent Strand
CG7945-RA 1451 CG7945-RA 555..1340 9..794 3930 100 Plus
CG7945-RB 1275 CG7945-RB 625..1164 255..794 2700 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:03
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 15521822..15522197 794..419 1880 100 Minus
3L 28110227 3L 15522968..15523215 256..9 1240 100 Minus
3L 28110227 3L 15522360..15522504 420..276 725 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:50:04 has no hits.

MXO02106.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:16 Download gff for MXO02106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-PA 1..789 9..798 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:51 Download gff for MXO02106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 1..802 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:26 Download gff for MXO02106.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7945-RA 549..1345 1..802 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:26 Download gff for MXO02106.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 15522968..15523221 1..256 98   Minus
3L 15521817..15522195 421..802 98 <- Minus
3L 15522360..15522502 278..420 100 <- Minus
3L 15522560..15522580 257..277 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:51 Download gff for MXO02106.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 15514917..15515295 421..802 98 <- Minus
arm_3L 15515460..15515602 278..420 100 <- Minus
arm_3L 15515660..15515680 257..277 100 <- Minus
arm_3L 15516068..15516321 1..256 98   Minus