Clone MXO02108 Report

Search the DGRC for MXO02108

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:8
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptNipsnap-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02108.3prime Sequence

760 bp (701 high quality bases) assembled on 2007-01-19

> MXO02108.3prime
ATGGTCTAGAAAGCTTGCTTGTGAGGGCGAGAACTCAGTGGGCGCCAGGA
CACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTCA
TCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTTG
CAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATCT
GCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGATG
GCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTCG
GTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGCG
GCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAAC
TTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGTC
TTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGGT
GCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAAT
TCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTTT
GTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTAT
GAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTCC
TTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTGA
ATCGCTGCGG

MXO02108.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:57
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 78..819 760..19 3685 99.8 Minus
CG9212-PA 822 Nipsnap-RA 78..819 760..19 3685 99.8 Minus
CG9212-PC 822 Nipsnap-RC 78..819 760..19 3685 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:00
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 278..1019 760..19 3695 99.9 Minus
Nipsnap-RC 1283 CG9212-RC 184..925 760..19 3695 99.9 Minus
Nipsnap-RA 1402 CG9212-RA 303..1044 760..19 3695 99.9 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:57
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 308..601 1470 100 Plus
X 23542271 X 16071721..16071879 602..760 780 99.4 Plus
X 23542271 X 16070723..16070868 19..164 730 100 Plus
X 23542271 X 16071033..16071178 163..308 730 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:28:58 has no hits.

MXO02108.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:16 Download gff for MXO02108.3prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 78..822 15..760 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:15 Download gff for MXO02108.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 184..930 11..760 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:07 Download gff for MXO02108.3prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 303..1049 11..760 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:07 Download gff for MXO02108.3prime
Subject Subject Range Query Range Percent Splice Strand
X 16071238..16071531 308..601 100 <- Plus
X 16071721..16071879 602..760 99   Plus
X 16070718..16070868 11..164 97 <- Plus
X 16071035..16071177 165..307 100 <- Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:15 Download gff for MXO02108.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15964751..15964901 11..164 97 <- Plus
arm_X 15965068..15965210 165..307 100 <- Plus
arm_X 15965271..15965564 308..601 100 <- Plus
arm_X 15965754..15965912 602..760 99   Plus

MXO02108.5prime Sequence

843 bp (767 high quality bases) assembled on 2007-01-19

> MXO02108.5prime
CAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCAAAAGCAAC
AACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAACGATTCAGA
ATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAACCAAGGAGT
CGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCCTTCATACC
CACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAACTACAAAAC
TACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTGCGAATTGG
TGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCCTGCACCTG
TGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAAGAAGACCT
TTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTCCAAGTTCT
TGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACTGGCCGCAA
ATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCATACCGACT
GACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCGCGCCATCA
ACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCTCGCAGATC
GGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCTCTGCAAGA
CCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATGGGATGAGT
GTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCCGTGTCCTG
GCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGACC

MXO02108.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:06
Subject Length Description Subject Range Query Range Score Percent Strand
CG9212-PB 822 Nipsnap-RB 1..819 9..827 4095 100 Plus
CG9212-PA 822 Nipsnap-RA 1..819 9..827 4095 100 Plus
CG9212-PC 822 Nipsnap-RC 1..819 9..827 4095 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16
Subject Length Description Subject Range Query Range Score Percent Strand
Nipsnap-RF 1377 CG9212-RF 201..1019 9..827 4095 100 Plus
Nipsnap-RC 1283 CG9212-RC 107..925 9..827 4095 100 Plus
Nipsnap-RA 1402 CG9212-RA 226..1044 9..827 4095 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:14
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 16071238..16071531 538..245 1470 100 Minus
X 23542271 X 16071721..16071901 244..64 905 100 Minus
X 23542271 X 16070723..16070868 827..682 730 100 Minus
X 23542271 X 16071033..16071178 683..538 730 100 Minus
X 23542271 X 16073027..16073082 64..9 280 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:20:15 has no hits.

MXO02108.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:17 Download gff for MXO02108.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9212-PC 1..822 9..831 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:32 Download gff for MXO02108.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RC 98..930 1..835 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:37 Download gff for MXO02108.5prime
Subject Subject Range Query Range Percent Splice Strand
Nipsnap-RA 217..1049 1..835 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:37 Download gff for MXO02108.5prime
Subject Subject Range Query Range Percent Splice Strand
X 16071035..16071177 539..681 100 <- Minus
X 16070718..16070868 682..835 97 <- Minus
X 16071238..16071531 245..538 100 <- Minus
X 16071721..16071900 65..244 100 <- Minus
X 16073027..16073089 1..64 93   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:32 Download gff for MXO02108.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 15965271..15965564 245..538 100 <- Minus
arm_X 15965754..15965933 65..244 100 <- Minus
arm_X 15964751..15964901 682..835 97 <- Minus
arm_X 15965068..15965210 539..681 100 <- Minus
arm_X 15967060..15967122 1..64 93   Minus