MXO02108.3prime Sequence
760 bp (701 high quality bases) assembled on 2007-01-19
> MXO02108.3prime
ATGGTCTAGAAAGCTTGCTTGTGAGGGCGAGAACTCAGTGGGCGCCAGGA
CACGGCAGTGCATCTCGCGGATTAATGGCACCGTGTAGGCCACACACTCA
TCCCATCCGGGGGATCGCCAGGCTGCTTCCCGGGTCTCCTTACGGTCTTG
CAGAGATTTGTAACACCAAATGTGATGAACATTGTACAGTCTTCCGATCT
GCGAGAAGAATCCGGCGAATGCTTCGTTGTTGTGCTTGCGATAGTTGATG
GCGCGGGCCCAGTTGTTTCCCCACTCAATCATGGTGCCAGGTGTCAGTCG
GTATGAGCGCATTTCGTAAATGTTCTTGCCGGTACGACTGGCAATTTGCG
GCCAGTAGCTGAATGCCAAGAGATATTGCAGATGACGGGAGCGCAAGAAC
TTGGAACGCTCCTGCATCAAGCTAAGATACTCGGGATCGTTCCAAAGGTC
TTCTTTGGCCTGATCTATCTTCTCGAAGCCTCCTGTGTACTTCCACAGGT
GCAGGCACTGATCCATGTCGCCCACTTGAACCGTCCATGATGCCACCAAT
TCGCAGGAAAGGTTTGCCTTCTTCTCGTTGATCAAAGCGACAGTAGTTTT
GTAGTTATTTAAGTAGCTGCCCATGGAATCGGGCCTGACGTTGTGGGTAT
GAAGGGCATATATGATTTCCTTATCGCTGAGCATTCGACTGTGCGACTCC
TTGGTTGGTTCTATTTTCCGAACGAGCAGTTTTGAGAACCATGATTCTGA
ATCGCTGCGG
MXO02108.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:04:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 78..819 | 760..19 | 3685 | 99.8 | Minus |
CG9212-PA | 822 | Nipsnap-RA | 78..819 | 760..19 | 3685 | 99.8 | Minus |
CG9212-PC | 822 | Nipsnap-RC | 78..819 | 760..19 | 3685 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 278..1019 | 760..19 | 3695 | 99.9 | Minus |
Nipsnap-RC | 1283 | CG9212-RC | 184..925 | 760..19 | 3695 | 99.9 | Minus |
Nipsnap-RA | 1402 | CG9212-RA | 303..1044 | 760..19 | 3695 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:28:57
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 308..601 | 1470 | 100 | Plus |
X | 23542271 | X | 16071721..16071879 | 602..760 | 780 | 99.4 | Plus |
X | 23542271 | X | 16070723..16070868 | 19..164 | 730 | 100 | Plus |
X | 23542271 | X | 16071033..16071178 | 163..308 | 730 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:28:58 has no hits.
MXO02108.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:16 Download gff for
MXO02108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 78..822 | 15..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:15 Download gff for
MXO02108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 184..930 | 11..760 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:07 Download gff for
MXO02108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 303..1049 | 11..760 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:07 Download gff for
MXO02108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16071238..16071531 | 308..601 | 100 | <- | Plus |
X | 16071721..16071879 | 602..760 | 99 | | Plus |
X | 16070718..16070868 | 11..164 | 97 | <- | Plus |
X | 16071035..16071177 | 165..307 | 100 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:15 Download gff for
MXO02108.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15964751..15964901 | 11..164 | 97 | <- | Plus |
arm_X | 15965068..15965210 | 165..307 | 100 | <- | Plus |
arm_X | 15965271..15965564 | 308..601 | 100 | <- | Plus |
arm_X | 15965754..15965912 | 602..760 | 99 | | Plus |
MXO02108.5prime Sequence
843 bp (767 high quality bases) assembled on 2007-01-19
> MXO02108.5prime
CAGTCGACATGCTTAAGCTACGTAATCTATTGGCCGTCGGCAAAAGCAAC
AACAACGCTGTCCGCTCTCTGTCCACCACTCCGAGCCGCAACGATTCAGA
ATCATGGTTCTCAAAACTGCTCGTTCGGAAAATAGAACCAACCAAGGAGT
CGCACAGTCGAATGCTCAGCGATAAGGAAATCATATATGCCCTTCATACC
CACAACGTCAGGCCCGATTCCATGGGCAGCTACTTAAATAACTACAAAAC
TACTGTCGCTTTGATCAACGAGAAGAAGGCAAACCTTTCCTGCGAATTGG
TGGCATCATGGACGGTTCAAGTGGGCGACATGGATCAGTGCCTGCACCTG
TGGAAGTACACAGGAGGCTTCGAGAAGATAGATCAGGCCAAAGAAGACCT
TTGGAACGATCCCGAGTATCTTAGCTTGATGCAGGAGCGTTCCAAGTTCT
TGCGCTCCCGTCATCTGCAATATCTCTTGGCATTCAGCTACTGGCCGCAA
ATTGCCAGTCGTACCGGCAAGAACATTTACGAAATGCGCTCATACCGACT
GACACCTGGCACCATGATTGAGTGGGGAAACAACTGGGCCCGCGCCATCA
ACTATCGCAAGCACAACAACGAAGCATTCGCCGGATTCTTCTCGCAGATC
GGAAGACTGTACAATGTTCATCACATTTGGTGTTACAAATCTCTGCAAGA
CCGTAAGGAGACCCGGGAAGCAGCCTGGCGATCCCCCGGATGGGATGAGT
GTGTGGCCTACACGGTGCCATTAATCCGCGAGATGCACTGCCGTGTCCTG
GCGCCCACTGAGTTCTCGCCCTCACAAGCAAGCTTTCTAGACC
MXO02108.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG9212-PB | 822 | Nipsnap-RB | 1..819 | 9..827 | 4095 | 100 | Plus |
CG9212-PA | 822 | Nipsnap-RA | 1..819 | 9..827 | 4095 | 100 | Plus |
CG9212-PC | 822 | Nipsnap-RC | 1..819 | 9..827 | 4095 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Nipsnap-RF | 1377 | CG9212-RF | 201..1019 | 9..827 | 4095 | 100 | Plus |
Nipsnap-RC | 1283 | CG9212-RC | 107..925 | 9..827 | 4095 | 100 | Plus |
Nipsnap-RA | 1402 | CG9212-RA | 226..1044 | 9..827 | 4095 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:14
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 16071238..16071531 | 538..245 | 1470 | 100 | Minus |
X | 23542271 | X | 16071721..16071901 | 244..64 | 905 | 100 | Minus |
X | 23542271 | X | 16070723..16070868 | 827..682 | 730 | 100 | Minus |
X | 23542271 | X | 16071033..16071178 | 683..538 | 730 | 100 | Minus |
X | 23542271 | X | 16073027..16073082 | 64..9 | 280 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:20:15 has no hits.
MXO02108.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:17 Download gff for
MXO02108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG9212-PC | 1..822 | 9..831 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:32 Download gff for
MXO02108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RC | 98..930 | 1..835 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:37 Download gff for
MXO02108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Nipsnap-RA | 217..1049 | 1..835 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:37 Download gff for
MXO02108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 16071035..16071177 | 539..681 | 100 | <- | Minus |
X | 16070718..16070868 | 682..835 | 97 | <- | Minus |
X | 16071238..16071531 | 245..538 | 100 | <- | Minus |
X | 16071721..16071900 | 65..244 | 100 | <- | Minus |
X | 16073027..16073089 | 1..64 | 93 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:32 Download gff for
MXO02108.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 15965271..15965564 | 245..538 | 100 | <- | Minus |
arm_X | 15965754..15965933 | 65..244 | 100 | <- | Minus |
arm_X | 15964751..15964901 | 682..835 | 97 | <- | Minus |
arm_X | 15965068..15965210 | 539..681 | 100 | <- | Minus |
arm_X | 15967060..15967122 | 1..64 | 93 | | Minus |