Clone MXO02110 Report

Search the DGRC for MXO02110

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:10
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4570-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02110.3prime Sequence

849 bp (686 high quality bases) assembled on 2007-01-19

> MXO02110.3prime
ATGGTCTAGAAAGCTTGCGCAGAACTCGGTCTGATCCCCGCCGTTGCGGA
GGACCGCTGAGACCCGCCACGTCATCGACTCGTAGAGCATCTCAATTTTG
TCCACCATGTCCTGGTCGCTGTGCCAGACGTCGTACAAGACGGCTCGAAA
CTCGCTGACATTTTTGGGCGCCTGATTCTGAATCCTCGGCTGGATGATGG
CCATCAATTGCTCGAGGAGATTGAGGTCATTGCAGACACTGCCCTCCGGT
CCCATCAGCGAGTCAAGGAAGATCTCCTTTGGCGGCGTTGATTCGTCGAC
GAATTTAAGATCGTCCATGTTGAAGATGTTGCGCCAGTCGCGCACGGTCC
AATCCTGATGGGCGGTGGCCCAGGCCAACCTCCTTTTTTTCGCCCCCTCA
CTGAGGCCGAAAGTGCTGGGCTCCTTCGGCTGTGGCGATCCTCTCGGTTG
CCGTATGCCTTTGGAGCGAATCTCGCTGATCCTGCGCTGCAAGGTCCTGC
GGCTGACCTCTATGCCGTGTCGGGCCAACTCCCGCTGCACATCGATGGAG
GTGTAGTGCGGATTGTCGCTCAGCATTTGCTCGACAATTTGCCGGTTCTC
CAGGACCTTGGGTCTGCCAACATCGCGCTTCTTTTCCTCCTCCTGCGCAA
CCGCCACGGGCGCCGCTGTTTTCAGTTTTTGCGGCAACCTCAGCGTGGCA
GTCTTCCCCTCGAGCAGCTCACACTCACGAATGCAGCTTATCACGCTCTC
CACGTCGCACTCCAGGATCTGGGCTATCTCCTCACAGCTGTTCGAGCCCT
TCACCGCCTTCACAATACTTCGAACTTCGGGAGCGAGAACCATGTCGAC

MXO02110.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:23
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 828 CG4570-RA 1..825 843..19 4100 99.8 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:33:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1260 CG4570-RA 207..1036 848..19 4120 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 23:33:00
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10857013..10857842 848..19 4120 99.8 Minus
Blast to na_te.dros performed on 2014-11-28 23:33:01 has no hits.

MXO02110.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:18 Download gff for MXO02110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..828 18..843 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:28:17 Download gff for MXO02110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 206..1046 12..849 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-29 00:16:26 Download gff for MXO02110.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 206..1046 12..849 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-29 00:16:26 Download gff for MXO02110.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 10857012..10857852 12..849 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:28:17 Download gff for MXO02110.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682734..6683574 12..849 99   Minus

MXO02110.5prime Sequence

797 bp (751 high quality bases) assembled on 2007-01-19

> MXO02110.5prime
CAGTCGACATGGTTCTCGCTCCCGAAGTTCGAAGTATTGTGAAGGCGCTG
AAGGGCTCGAACAGCTGTGAGGAGATAGCCCAGATCCTGGAGTGCGACGT
GGAGAGCGTGATAAGCTGCATTCGTGAGTGTGAGCTGCTCGAGGGGAAGA
CTGCCACGCTGAGGTTGCCGCAAAAACTGAAAACAGCGGCGCCCGTGGCG
GTTGCGCAGGAGGAGGAAAAGAAGCGCGATGTTGGCAGACCCAAGGTCCT
GGAGAACCGGCAAATTGTCGAGCAAATGCTGAGCGACAATCCGCACTACA
CCTCCATCGATGTGCAGCGGGAGTTGGCCCGACACGGCATAGAGGTCAGC
CGCAGGACCTTGCAGCGCAGGATCAGCGAGATTCGCTCCAAAGGCATACG
GCAACCGAGAGGATCGCCACAGCCGAAGGAGCCCAGCACTTTCGGCCTCA
GTGAGGGGGCGAAAAAAAGGAGGTTGGCCTGGGCCACCGCCCATCAGGAT
TGGACCGTGCGCGACTGGCGCAACATCTTCAACATGGACGATCTTAAATT
CGTCGACGAATCAACGCCGCCAAAGGAGATCTTCCTTGACTCGCTGATGG
GACCGGAGGGCAGTGTCTGCAATGACCTCAATCTCCTCGAGCAATTGATG
GCCATCATCCAGCCGAGGATTCAGAATCAGGCGCCCAAAAATGTCAGCGA
GTTTCGAGCCGTCTTGTACGACGTCTGGCACAGCGACCAGGACATGGTGG
ACAAAATTGAGATGCTCTACGAGTCGATGACGTGGCGGGTCTCAGCG

MXO02110.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:31
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-PA 828 CG4570-RA 1..789 9..797 3945 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG4570-RA 1260 CG4570-RA 207..1000 4..797 3955 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:36
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 10857013..10857806 4..797 3955 99.9 Plus
Blast to na_te.dros performed on 2014-11-28 19:22:37 has no hits.

MXO02110.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:18 Download gff for MXO02110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-PA 1..789 9..797 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:03 Download gff for MXO02110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 204..1000 1..797 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:17 Download gff for MXO02110.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4570-RA 204..1000 1..797 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:17 Download gff for MXO02110.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 10857010..10857806 1..797 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:03 Download gff for MXO02110.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 6682732..6683528 1..797 99   Plus