MXO02111.3prime Sequence
815 bp (708 high quality bases) assembled on 2007-01-19
> MXO02111.3prime
ATGGTCTAGAAAGCTTGCCTCTTGTATATCCATTTCCTGAGTTGCCTGCT
GCATGTCGTGCAATTGTGCCCGCAAATCTTCGGGCAAAGTGTGCTCGTTC
AAGGCACTAGGGTCTTCACCATCCACGACAATCTCCTCTGGATCTGGGGC
TCGTGGCAAAAAGTCGGCATCTGGGAACATTTTGCCAAATATGTCGCGAG
CATTGGCAATGGCCGCGTCATAATCCAGCTCGTAGGTAGGTGGATCGGTG
TAGTAAATATGCTCGGCAGCGGGACTTTTACTAGACTGGGCAGCAATTGT
GAAGTATGAGCTAAATATTATTTGTGCGTCTGATTGATCGAAGAGTTGGC
TAGTGAAAATGGCTAGATCAGACGCTGGATCCTCGCTCAACGCTGGCGTG
GTCAGATGGAAGATATATAAACCCTCGGGACAGGCTCCCGTGTAGTGCGA
CAGTTGTATTAGGAAGGCTTCCCGTCCACCTTCATTGTCAAGTAGTCGAA
GAAGATTTACACCACCACCTCCCTTGTTCAGCTCCTCATTGCCCAGGGGA
CTGGACGATATGAACAAGCCACGTGAGATGTGCGGCTTCAACTCGATGCC
CTTTGAAACTGGTGTATAGCCAGGGGCAGAGACCACATTCTTGGCACGCA
AAGTTTTCCCTGCGCTGCTCAGCAGGAACTCATTCGAATTGGAATCTAAG
GCAATGTCGTCAACGGCTCGCTTTAGGCAGCAAATGCCCACCATAAACAG
CGCACAAACGGCAGAAGCACTGCGGCAATTCCCCCCAGCCATACATGGGA
AAGAAAAAGGTTGTG
MXO02111.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8432-PA | 1536 | Rep-RA | 743..1533 | 810..19 | 3845 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rep-RA | 1923 | CG8432-RA | 875..1670 | 815..19 | 3900 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19493475..19493872 | 416..19 | 1990 | 100 | Minus |
| 2R | 25286936 | 2R | 19493020..19493417 | 815..417 | 1885 | 98.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:04:01 has no hits.
MXO02111.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:18 Download gff for
MXO02111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8432-PA | 738..1536 | 18..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:19 Download gff for
MXO02111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 875..1670 | 19..815 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:18 Download gff for
MXO02111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 875..1670 | 19..815 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:18 Download gff for
MXO02111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19493020..19493417 | 417..815 | 98 | -> | Minus |
| 2R | 19493475..19493872 | 19..416 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:19 Download gff for
MXO02111.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15380525..15380922 | 417..815 | 98 | -> | Minus |
| arm_2R | 15380980..15381377 | 19..416 | 100 | | Minus |
MXO02111.5prime Sequence
786 bp (632 high quality bases) assembled on 2007-01-19
> MXO02111.5prime
CAGTCGACATGTTGGATGACCTGCCGGAGCAGTTTGACCTGGTCGTCATA
GGCACAGGCTTCACCGAGTCCTGCATCGCCGCTGCGGGCAGCAGGATAGG
CAAATCGGTGCTCCACCTGGATAGTAATGAGTACTACGGGGATGTTTGGA
GCTCCTTCTCTATGGATGCTCTATGTGCCCGCTTGGACCAGGAAGTCGAG
CCTCATTCTGCATTGCGAAACGCAAGGTACACCTGGCATTCCATGGAAAA
AGAATCAGAAACAGATGCACAATCCTGGAATAGGGACTCAGTGCTGGCCA
AGTCGCGACGCTTCAGCTTGGATCTATGCCCGCGCATTTTATACGCAGCC
GGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACATCTGCCGCTATGCTGA
ATTCCGAGCCGTGGACCATGTGTGCATGCGCCACAATGGTGAAATTGTGT
CCGTGCCCTGCTCCCGTAGCGATGTCTTCAACACCAAAACACTGACCATC
GTGGAAAAGCGCTTGCTGATGAAATTTCTCACCGCCTGCAACGATTACGG
CGAGGACAAGTGCAACGAGGACTCGTTGGAATTCCGGGGACGAACGTTTC
TGGAATATTTGCAGGCGCAGCGGGTGACCGAAAAGATATCGTCGTGCGTG
ATGCAGGCCATTGCCATGTGCGGCCCCAGCACCAGCTTCGAGGAGGGTAT
GCAGCGCACACAACGATTTCTGGGCAGTCTGGGCCGCTATGGCAACACAC
CCTTTCTCTTTCCCATGTATGGCTGCGGGGATTTGC
MXO02111.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG8432-PA | 1536 | Rep-RA | 1..773 | 9..781 | 3865 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rep-RA | 1923 | CG8432-RA | 136..915 | 7..786 | 3885 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19492329..19493060 | 55..786 | 3645 | 99.9 | Plus |
| 2R | 25286936 | 2R | 19492222..19492273 | 7..58 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:15 has no hits.
MXO02111.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:19 Download gff for
MXO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8432-PA | 1..778 | 9..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:58 Download gff for
MXO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 130..915 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:31 Download gff for
MXO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 130..915 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:31 Download gff for
MXO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19492216..19492272 | 1..57 | 93 | -> | Plus |
| 2R | 19492332..19493060 | 58..786 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:58 Download gff for
MXO02111.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15379721..15379777 | 1..57 | 93 | -> | Plus |
| arm_2R | 15379837..15380565 | 58..786 | 99 | | Plus |
