Clone Sequence Records
MXO02112.3prime Sequence
825 bp (671 high quality bases) assembled on 2007-01-19
> MXO02112.3prime
ATGGTCTAGAAAGCTTGCCCCCTGTCCCCTCCAGAGTTCTCCGAGAAATG
TCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAATA
AAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCTC
AGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCGA
TCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAATG
AAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCAC
CGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGGG
CATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCGC
TCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAATT
GGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCGG
CCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCAA
ATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTAA
AGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTCA
ATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATAC
GAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTACT
GATGCAACCGAAGCGCAGACTACTGATCCAGGAATTGCCTGCCGCAACCG
ACGAGTGTTCCCAGCGACGGGTTAT
MXO02112.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 739..1545 | 825..19 | 4035 | 100 | Minus |
CG8533-PA | 1548 | CG8533-RA | 739..1545 | 825..19 | 4035 | 100 | Minus |
CG8533-PC | 1302 | CG8533-RC | 493..1299 | 825..19 | 4035 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 1132..1938 | 825..19 | 4035 | 100 | Minus |
Ir76a-RD | 1735 | CG42584-RD | 876..1682 | 825..19 | 4035 | 100 | Minus |
Ir76a-RA | 1722 | CG42584-RA | 863..1669 | 825..19 | 4035 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802898..19803374 | 495..19 | 2385 | 100 | Minus |
3L | 28110227 | 3L | 19802511..19802840 | 825..496 | 1650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:15:26 has no hits.
MXO02112.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:19 Download gff for
MXO02112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 493..1302 | 18..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:41 Download gff for
MXO02112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 863..1675 | 10..825 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:23 Download gff for
MXO02112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RA | 863..1675 | 10..825 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:23 Download gff for
MXO02112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19802511..19802840 | 496..825 | 100 | -> | Minus |
3L | 19802898..19803380 | 10..495 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:41 Download gff for
MXO02112.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19795611..19795940 | 496..825 | 100 | -> | Minus |
arm_3L | 19795998..19796480 | 10..495 | 99 | | Minus |
MXO02112.5prime Sequence
710 bp (699 high quality bases) assembled on 2007-01-19
> MXO02112.5prime
CAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCGAGGTAGTC
ATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTATGAAAAGCC
ACCATTATATTATGATCGTTTTATGAACACGACGGATGTAACCATTGATG
GAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACAACTGCACC
ATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATCTACTTGAA
TGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACGAAACGATT
ACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGTATATGGAC
ATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTGCCCGCTCC
GAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCAGTTTGTCC
TCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAGCTCTTGGT
ATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAATTCCTGGAT
CAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTTCGTAAATC
AGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCGTCCTAGTG
GCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGTGGCGGTCT
GCGGCATCTC
MXO02112.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:02
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG8533-PB | 1548 | CG8533-RB | 247..939 | 9..701 | 3465 | 100 | Plus |
CG8533-PA | 1548 | CG8533-RA | 247..939 | 9..701 | 3465 | 100 | Plus |
CG8533-PC | 1302 | CG8533-RC | 1..693 | 9..701 | 3465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:26
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Ir76a-RE | 1991 | CG42584-RE | 640..1332 | 9..701 | 3465 | 100 | Plus |
Ir76a-RA | 1722 | CG42584-RA | 371..1063 | 9..701 | 3465 | 100 | Plus |
Ir76a-RB | 1761 | CG8533-RB | 410..1102 | 9..701 | 3465 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:24
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3L | 28110227 | 3L | 19802335..19802711 | 325..701 | 1885 | 100 | Plus |
3L | 28110227 | 3L | 19801987..19802114 | 89..216 | 625 | 99.2 | Plus |
3L | 28110227 | 3L | 19802161..19802277 | 212..328 | 570 | 99.1 | Plus |
3L | 28110227 | 3L | 19801845..19801929 | 9..93 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:31:25 has no hits.
MXO02112.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:20 Download gff for
MXO02112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG8533-PC | 1..703 | 9..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:45 Download gff for
MXO02112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 403..1112 | 1..710 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:16 Download gff for
MXO02112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Ir76a-RB | 403..1112 | 1..710 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:16 Download gff for
MXO02112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3L | 19801838..19801928 | 1..92 | 95 | -> | Plus |
3L | 19801991..19802114 | 93..216 | 100 | -> | Plus |
3L | 19802166..19802274 | 217..325 | 100 | -> | Plus |
3L | 19802336..19802721 | 326..710 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:45 Download gff for
MXO02112.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3L | 19795091..19795214 | 93..216 | 100 | -> | Plus |
arm_3L | 19795266..19795374 | 217..325 | 100 | -> | Plus |
arm_3L | 19794938..19795028 | 1..92 | 95 | -> | Plus |
arm_3L | 19795436..19795821 | 326..710 | 99 | | Plus |