Clone MXO02112 Report

Search the DGRC for MXO02112

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:12
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptIr76a-RC
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02112.3prime Sequence

825 bp (671 high quality bases) assembled on 2007-01-19

> MXO02112.3prime
ATGGTCTAGAAAGCTTGCCCCCTGTCCCCTCCAGAGTTCTCCGAGAAATG
TCAGAAGGCTACAAATCATGCCGAAGCACCAAAGCAGGATTAGGCCAATA
AAATTATCAATGCCAAGTTTAACAGGTCCTATATCTAGGTTCGTTTTCTC
AGATGCCACGATGCGATTTTGGCGGTGCGCATTCATGTATTCGGCGGCGA
TCTTCCATTCCCAGAATTTGTCAAAGCCCGAGGAATGCCAAGCCAGAATG
AAGTCGTTGTAGGCATTTAAGTGCGGCCACAGTCGCGGCACAAACGCCAC
CGTAAATGCAAAGTAAATATCATCCACCATAAGTTTCAGCCGCTTTAGGG
CATCGTTTTCTATTAGCTCGGTGTTGCCCAAATGACCAAACTGAAGGCGC
TCGACGACAAATCCCATTTGCTCCGTGTGCGAGAAGGCGGATATTAAATT
GGCATCGTAAACTCGGTAATGCTCCATTAAACCAAGAAGAACTGGGTCGG
CCGATCGCTCGTCAATGGTGGTAATCCAGGCCTGTGAAGTCCCCGTCCAA
ATGAGCTTATGGTCGAAGAGACGTTGGCGAGAGTCCGCCGCTTCCTCTAA
AGTGGGCAAAGTGAGGATGGCCGCCAGACCGCCACTGTACACAGTGGTCA
ATATAATGTCGATCATGTAGCTGGCCACTAGGACGGTTCTTAGAGCATAC
GAGCTGGTCACATAATTGGTGCTCTGATTTACGAAAAGTTTCAGCGTACT
GATGCAACCGAAGCGCAGACTACTGATCCAGGAATTGCCTGCCGCAACCG
ACGAGTGTTCCCAGCGACGGGTTAT

MXO02112.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:05:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 739..1545 825..19 4035 100 Minus
CG8533-PA 1548 CG8533-RA 739..1545 825..19 4035 100 Minus
CG8533-PC 1302 CG8533-RC 493..1299 825..19 4035 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:27
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 1132..1938 825..19 4035 100 Minus
Ir76a-RD 1735 CG42584-RD 876..1682 825..19 4035 100 Minus
Ir76a-RA 1722 CG42584-RA 863..1669 825..19 4035 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:25
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802898..19803374 495..19 2385 100 Minus
3L 28110227 3L 19802511..19802840 825..496 1650 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:15:26 has no hits.

MXO02112.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:19 Download gff for MXO02112.3prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 493..1302 18..825 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:41 Download gff for MXO02112.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 863..1675 10..825 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:23 Download gff for MXO02112.3prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RA 863..1675 10..825 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:23 Download gff for MXO02112.3prime
Subject Subject Range Query Range Percent Splice Strand
3L 19802511..19802840 496..825 100 -> Minus
3L 19802898..19803380 10..495 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:41 Download gff for MXO02112.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19795611..19795940 496..825 100 -> Minus
arm_3L 19795998..19796480 10..495 99   Minus

MXO02112.5prime Sequence

710 bp (699 high quality bases) assembled on 2007-01-19

> MXO02112.5prime
CAGTCGACATGTCCAGCAAGATGCGAAACCTCAAGGGACGCGAGGTAGTC
ATAGGCATCTTCGACTACAAGCCTTTTATGCTATTGGATTATGAAAAGCC
ACCATTATATTATGATCGTTTTATGAACACGACGGATGTAACCATTGATG
GAACAGATATTCAACTAATGCTCATTTTCTGCGAGTTGTACAACTGCACC
ATTCAGGTGGACACATCTGAACCATACGACTGGGGTGACATCTACTTGAA
TGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCGATAGACGAAACGATT
ACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCGTACGAGTATATGGAC
ATGACTCATTTTCTGGGACGATCTGGAGTAACCTGTCTGGTGCCCGCTCC
GAACCGTTTAATCAGCTGGACGCTCCTGCTCCGACCATTCCAGTTTGTCC
TCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAGAGCTTAGCTCTTGGT
ATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGCAGGCAATTCCTGGAT
CAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGAAACTTTTCGTAAATC
AGAGCACCAATTATGTGACCAGCTCGTATGCTCTAAGAACCGTCCTAGTG
GCCAGCTACATGATCGACATTATATTGACCACTGTGTACAGTGGCGGTCT
GCGGCATCTC

MXO02112.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:02
Subject Length Description Subject Range Query Range Score Percent Strand
CG8533-PB 1548 CG8533-RB 247..939 9..701 3465 100 Plus
CG8533-PA 1548 CG8533-RA 247..939 9..701 3465 100 Plus
CG8533-PC 1302 CG8533-RC 1..693 9..701 3465 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:26
Subject Length Description Subject Range Query Range Score Percent Strand
Ir76a-RE 1991 CG42584-RE 640..1332 9..701 3465 100 Plus
Ir76a-RA 1722 CG42584-RA 371..1063 9..701 3465 100 Plus
Ir76a-RB 1761 CG8533-RB 410..1102 9..701 3465 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:24
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 19802335..19802711 325..701 1885 100 Plus
3L 28110227 3L 19801987..19802114 89..216 625 99.2 Plus
3L 28110227 3L 19802161..19802277 212..328 570 99.1 Plus
3L 28110227 3L 19801845..19801929 9..93 425 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:31:25 has no hits.

MXO02112.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:20 Download gff for MXO02112.5prime
Subject Subject Range Query Range Percent Splice Strand
CG8533-PC 1..703 9..710 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:45 Download gff for MXO02112.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 403..1112 1..710 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:16 Download gff for MXO02112.5prime
Subject Subject Range Query Range Percent Splice Strand
Ir76a-RB 403..1112 1..710 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:16 Download gff for MXO02112.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 19801838..19801928 1..92 95 -> Plus
3L 19801991..19802114 93..216 100 -> Plus
3L 19802166..19802274 217..325 100 -> Plus
3L 19802336..19802721 326..710 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:45 Download gff for MXO02112.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 19795091..19795214 93..216 100 -> Plus
arm_3L 19795266..19795374 217..325 100 -> Plus
arm_3L 19794938..19795028 1..92 95 -> Plus
arm_3L 19795436..19795821 326..710 99   Plus