MXO02113.3prime Sequence
517 bp (420 high quality bases) assembled on 2007-01-19
> MXO02113.3prime
ATGGTCTAGAAAGCTTGCAACGCCGTTTTGAAAATCCTTTTCAATGTGGG
TCTTGTTCCATTCGCCGTGCGGATCCAATCCAGTCATTGTCTCCTCAATG
AAGTGCATCTTATTCTCGCTGTCCACCAGGACAACGGAGTGTGTACGGCT
GCCATAGGCATGCTCTTCGATATGGACGTTTAGGGAACTCAATCCCTCGC
CCCAGTTGGGCGCACGTGTCTTTAGCTCGTCGTCCGGCCAGAATTTGTGC
TTGTTGCGGAGCAACTGCATCAGCTGGGCGGACAGAGTCTCCACGCTGGC
TTCCCCATGAGCCTTAACGATCGCCTCGAACTCCTGTTTGCCATGACGCA
CCTTCTCGAACGGAGAGTGCGGCAGACTGTTGCCAAATCCGTAGCACTCG
CCGTTCTGGAAATCCTCCAGCGTGGGCGGCACATTGCTCAGCAGCTTCAC
GCGAGCGGGCTGGGATGCAGATCCAATTTCCATGGACACAAAGTTGAAAG
CAGAATACTTGGTGGCA
MXO02113.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11176-PA | 852 | CG11176-RA | 354..849 | 514..19 | 2430 | 99.5 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-RC | 1302 | CG11176-RC | 650..1145 | 514..19 | 2450 | 99.6 | Minus |
| Tango2-RD | 1622 | CG11176-RD | 970..1465 | 514..19 | 2450 | 99.6 | Minus |
| Tango2-RB | 1547 | CG11176-RB | 899..1394 | 514..19 | 2450 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13618596..13619050 | 473..19 | 2275 | 100 | Minus |
| X | 23542271 | X | 13618361..13618402 | 514..473 | 180 | 95.2 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:44 has no hits.
MXO02113.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:20 Download gff for
MXO02113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11176-PA | 353..852 | 16..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:05 Download gff for
MXO02113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RB | 898..1394 | 19..516 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:20 Download gff for
MXO02113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RB | 898..1394 | 19..516 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:20 Download gff for
MXO02113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13618360..13618402 | 473..516 | 93 | -> | Minus |
| X | 13618597..13619050 | 19..472 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:05 Download gff for
MXO02113.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13512393..13512435 | 473..516 | 93 | -> | Minus |
| arm_X | 13512630..13513083 | 19..472 | 100 | | Minus |
MXO02113.5prime Sequence
873 bp (779 high quality bases) assembled on 2007-01-19
> MXO02113.5prime
CAGTCGACATGTGCGTGATATTCTTTTGTGCGGACTCGAATCCGCAACCG
GGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGACGAGTTCTTTGCCCG
CGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGATCATGTTTACGGAG
GGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCTGGCTGGCGATCGGC
CACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTCAATCTGACCGGCGA
GCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGATTGTGGCGGACTATG
TTACCCGGGCGGACGAGGAGCACAGCATCCTGAACTACAACGAAAGGCTG
CTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTTGTGTCCATCGAAAT
TGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCTGAGCAATGTGCCGC
CCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACGGATTTGGCAACAGT
CTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGCAAACAGGAGTTCGA
GGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGAGACTCTGTCCGCCC
AGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCTGGCCGGACGACGAG
CTAAAGACACGTGCGCCCAACTGGGGCGAGGGATTGAGTTCCCTAAACGT
CCATATCGAAGAGCATGCCTATGGCAGCCGTACACACTCCGTTGTCCTGG
TGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACAATGACTGGATTG
GATCCGCACGGCGAATGGAACAAGACCCACATTGAAAAGGATTTTCAAAA
CGGCGTTGCAAGCTTTCTAAACC
MXO02113.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11176-PA | 852 | CG11176-RA | 1..849 | 9..857 | 4245 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-RC | 1302 | CG11176-RC | 297..1145 | 9..857 | 4245 | 100 | Plus |
| Tango2-RA | 1451 | CG11176-RA | 446..1294 | 9..857 | 4245 | 100 | Plus |
| Tango2-RD | 1622 | CG11176-RD | 881..1465 | 273..857 | 2925 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13618596..13619050 | 403..857 | 2275 | 100 | Plus |
| X | 23542271 | X | 13617434..13617576 | 9..151 | 715 | 100 | Plus |
| X | 23542271 | X | 13618272..13618402 | 273..403 | 655 | 100 | Plus |
| X | 23542271 | X | 13617812..13617937 | 149..274 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:09 has no hits.
MXO02113.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:21 Download gff for
MXO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11176-PA | 1..852 | 9..860 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:18 Download gff for
MXO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RA | 436..1294 | 1..857 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:12 Download gff for
MXO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RA | 436..1294 | 1..857 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:12 Download gff for
MXO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13617424..13617575 | 1..150 | 97 | -> | Plus |
| X | 13617814..13617936 | 151..273 | 100 | -> | Plus |
| X | 13618273..13618402 | 274..403 | 100 | -> | Plus |
| X | 13618597..13619050 | 404..857 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:18 Download gff for
MXO02113.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13511457..13511608 | 1..150 | 97 | -> | Plus |
| arm_X | 13511847..13511969 | 151..273 | 100 | -> | Plus |
| arm_X | 13512306..13512435 | 274..403 | 100 | -> | Plus |
| arm_X | 13512630..13513083 | 404..857 | 100 | | Plus |
