MXO02114.3prime Sequence
553 bp (535 high quality bases) assembled on 2007-01-19
> MXO02114.3prime
ATGGTCTAGAAAGCTTGCTTGGGTGTGCGCGGTTATCACGATGTTGATTT
GCGGATAGATATCCGGCTTCACCTCCGACGTAATCAGCTGCACCATCCGC
TGCTGCAGTTCGTCCTGGCTGGCCTGCGTACCGGGCGGTATCATCCAAAT
GGCATCGCCAAAGTACCAGCCATTTGAAGTGCACAGCCGCCACATTGTCG
GCGGCTGCGTGGGCATCATATCGGCCAGGATATCACAAGTTTCGCCCGGA
CGTAGGGCGGGCACATTGATGCGCTGCGTCTGGATGGGCGAGGTCAGATA
GCAGTTGTTCGGCCAGCGCTCGGTGCCATCGTTCTGCAGCTGAAACGCTT
GCTGCTGAGCATTCACTTGCTTCTCCTGGACGATCTTCCTCGAAGGCAGC
GACTGTAAGCTGCAGAAGTCCAGATAGCAGCCCACCGCCGTCTGCAGGCT
CCAGTTACTCATCTCTAGGTAAAACCTGGCCGATTCCCGGTTCATCTGGT
TGTTCATTAGGCTCTGAAACTGGCTGATGAGGTCTTCCTGGTCCGTGGTG
CCC
MXO02114.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5445-PB | 912 | CG5445-RB | 375..909 | 553..19 | 2625 | 99.6 | Minus |
| CG5445-PC | 912 | CG5445-RC | 375..909 | 553..19 | 2625 | 99.6 | Minus |
| CG5445-PA | 912 | CG5445-RA | 375..909 | 553..19 | 2625 | 99.6 | Minus |
| CG5445-PD | 912 | CG5445-RD | 375..909 | 553..19 | 2625 | 99.6 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5445-RG | 2047 | CG5445-RG | 872..1406 | 553..19 | 2645 | 99.6 | Minus |
| CG5445-RF | 1740 | CG5445-RF | 565..1099 | 553..19 | 2645 | 99.6 | Minus |
| CG5445-RD | 1995 | CG5445-RD | 820..1354 | 553..19 | 2645 | 99.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17304074..17304370 | 452..156 | 1470 | 99.7 | Minus |
| X | 23542271 | X | 17304697..17304834 | 156..19 | 690 | 100 | Minus |
| X | 23542271 | X | 17303289..17303391 | 553..451 | 500 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:19 has no hits.
MXO02114.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:21 Download gff for
MXO02114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-PD | 375..912 | 16..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:22 Download gff for
MXO02114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-RD | 820..1359 | 13..553 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:16 Download gff for
MXO02114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-RD | 820..1359 | 13..553 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:16 Download gff for
MXO02114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17304075..17304370 | 156..451 | 99 | -> | Minus |
| X | 17304698..17304839 | 13..155 | 97 | | Minus |
| X | 17303289..17303390 | 452..553 | 99 | -> | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:22 Download gff for
MXO02114.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17197322..17197423 | 452..553 | 99 | -> | Minus |
| arm_X | 17198108..17198403 | 156..451 | 99 | -> | Minus |
| arm_X | 17198731..17198872 | 13..155 | 97 | | Minus |
MXO02114.5prime Sequence
749 bp (666 high quality bases) assembled on 2007-01-19
> MXO02114.5prime
GCGGCCGCGACGTCCACATATACCTGCCGTTCACTATTATTTAGTGAAAT
GAGATATTATGATATTTTCTGAATTGTGATTAAAAAGGCAACTTTATGCC
CATGCAACAGAAACTATAAAAAATACAGAGAATGAAAAGAAACAGATAGA
TTTTTTAGTTCTTTAGGCCCGTAGTCTGCAAATCCTTTTATGATTTTCTA
TCAAACAAAAGAGGAAAATAGACCAGTTGCAATCCAAACGAGAGTCTAAT
AGAATGAGGTCGAAAAGTAAATCGCGCGGGTTTGTTACTGATAAAGCAGG
CAAGACCTAAAATGTGTAAAGGGCAAAGTGTATACTTTGGCGTCACCCCT
TACATATTTTAGGTCTTTTTTTATTGTGCGTAACTAACTTGCCATCTTCA
AACAGGAGGGCTGGAAGAAGCAGACCGCTAACACAGTACATAAAAAAGGA
GACATGAACGATGAACATCAAAAAGTTTGCAAAACAAGCAACAGTATTAA
CCTTTACTACCGCACTGCTGGCAGGAGGCGCAACTCAAGCGTTTGCGAAA
GAAACGAACCAAAAGCCATATAAGGAAACATACGGCATTTCCCATATTAC
ACGCCATGATATGCTGCAAATCCCTGAACAGCAAAAAAATGAAAAATATA
AAGTTCCTGAGTTCGATTCGTCCACAATTAAAAATATCTCTTCTGCAAAA
GGCCTGGACGTTTGGGACAGCTGGCCATTACAAAACACTGAAGGCACTG
MXO02114.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed on 2007-05-10 05:06:35 has no hits.
Blast to dmel-all-transcript-r6.02.fasta performed on 2014-11-28 23:33:08 has no hits.
Blast to na_all.dmel.RELEASE6 performed on 2014-11-28 23:33:06 has no hits.
Blast to na_te.dros performed on 2014-11-28 23:33:07 has no hits.
MXO02114.5prime Sim4 Records
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:16:31 has no hits.
Sim4 to na_all.dmel.RELEASE6 performed on 2014-11-29 00:16:31 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:28:20 has no hits.
Sim4 to na_arms.dmel.RELEASE5 performed on 2013-08-05 01:28:20 has no hits.
