Clone MXO02116 Report

Search the DGRC for MXO02116

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:16
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG11474-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02116.3prime Sequence

878 bp (769 high quality bases) assembled on 2007-01-19

> MXO02116.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGCAAACTGTATTACGCCATACTCGC
CAGTCAACATCCACTCCTTATCCTTGGCAAACAGTTGGTCCGCCACGCCT
GCACCCAATCCGCAGATCAGATCCGCTTTAATTGTGCGCAGAGTGCAGAG
ATTGGAAGGACGAAAGCCCCTCAAGCAAGTTTCGAAGGACTCCGTGCTGT
CCCAGGAGAAGTCGCCTAACAACTTGCGATAGTTGAGGTCACCCTTGAAG
ATAACCAGTTGCGCCTCCTTCAGGCGGTCGTAGAGTGAGGGATTTACCTC
TGGCATGCGATAGAACTCGTAGGGACTCGTCCAAAAGTGTTCCAGTGGCG
AAAGCTCGAACTTGCCCTCGGTCGTCAAACGCTGCCACTCTCCTCCGACC
TCACTCAGCACAGGATCCGGATGGTCGGCCAGAAATTGAAGTGCCCAGTG
GAAGTCGTGCTCCATCACGTCCGAAATGAACCAAGGAATGGCCTTGGGAT
TGAAGCGCACCTTGGCAGCCAATCCCTTGTCGATAATGTACTCAGCCAGA
ATGAGATCCGTGTACAGCTCATAGCCGGCGTTGTCGAAAATGATGTCCAC
AATGCCCTCTCCGGAGGCTCCGTCCAGGGCTTTCCATACCTCCGCGGTGC
CGTCGATTAGTAGCTTCTCCTCCAAATCCGTAACTTGGTCAAAGGCATTG
CCAGTGGGCTTCACCTGTTTGCCGGAGGTTATGGACAGATCGCATCGGTT
GCCCCACAAATTGAGTTTGATCAACTGGCGGAAGGTGTCCGAGTTTCGTT
CATTGTGCCGCGTAGCCTTGGGCACCGCCAGCATGGCGTCCACGCTCAGT
TTGGTCGCCGTCTGTTCTGTGTGATATC

MXO02116.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PB 1308 CG11474-RB 458..930 866..394 2340 99.7 Minus
CG11474-PA 1311 CG11474-RA 461..933 866..394 2340 99.7 Minus
CG11474-PB 1308 CG11474-RB 937..1305 387..19 1845 100 Minus
CG11474-PA 1311 CG11474-RA 940..1308 387..19 1845 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1776 CG11474-RC 604..1451 866..19 4165 99.4 Minus
CG11474-RA 1520 CG11474-RA 529..1376 866..19 4165 99.4 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:20
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22071765..22072464 167..866 3425 99.3 Plus
2R 25286936 2R 22071559..22071708 19..168 750 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:20:21 has no hits.

MXO02116.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:22 Download gff for MXO02116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 457..1311 18..869 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:34 Download gff for MXO02116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 525..1376 19..869 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:41 Download gff for MXO02116.3prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 525..1376 19..869 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:41 Download gff for MXO02116.3prime
Subject Subject Range Query Range Percent Splice Strand
2R 22071559..22071707 19..167 100 <- Plus
2R 22071766..22072468 168..869 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:34 Download gff for MXO02116.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17959064..17959212 19..167 100 <- Plus
arm_2R 17959271..17959973 168..869 99   Plus

MXO02116.5prime Sequence

752 bp (647 high quality bases) assembled on 2007-01-19

> MXO02116.5prime
CAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATGGAATCGTG
GACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTATAAGCAGAG
CTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTTGGCCACCA
TCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGC
GCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTTAGACAGCT
GCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGGTGAAAATG
ATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGCCCAAGGAG
AAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGTTATATGTA
CCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACG
ACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGGACGCC
ATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAACTCGGACAC
CTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATGCGATCTGT
CCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCTTTGACCAA
GTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCGGAGGTATG
GAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACATCATTTTCG
AC

MXO02116.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:59
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-PA 1311 CG11474-RA 1..744 9..752 3720 100 Plus
CG11474-PB 1308 CG11474-RB 203..741 214..752 2695 100 Plus
CG11474-PB 1308 CG11474-RB 1..196 9..204 980 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:28
Subject Length Description Subject Range Query Range Score Percent Strand
CG11474-RC 1776 CG11474-RC 139..887 4..752 3730 99.9 Plus
CG11474-RA 1520 CG11474-RA 64..812 4..752 3730 99.9 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:25
Subject Length Description Subject Range Query Range Score Percent Strand
2R 25286936 2R 22072181..22072633 752..300 2265 100 Minus
2R 25286936 2R 22072961..22073067 204..98 535 100 Minus
2R 25286936 2R 22072798..22072895 300..203 490 100 Minus
2R 25286936 2R 22073211..22073305 98..4 460 98.9 Minus
Blast to na_te.dros performed on 2014-11-28 19:50:27 has no hits.

MXO02116.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:23 Download gff for MXO02116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-PA 1..744 9..752 100   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:04 Download gff for MXO02116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 62..812 1..752 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:37 Download gff for MXO02116.5prime
Subject Subject Range Query Range Percent Splice Strand
CG11474-RA 62..812 1..752 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:37 Download gff for MXO02116.5prime
Subject Subject Range Query Range Percent Splice Strand
2R 22072181..22072632 301..752 100 <- Minus
2R 22072798..22072894 204..300 100 <- Minus
2R 22072962..22073067 98..203 100 <- Minus
2R 22073212..22073306 1..97 96   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:04 Download gff for MXO02116.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2R 17959686..17960137 301..752 100 <- Minus
arm_2R 17960303..17960399 204..300 100 <- Minus
arm_2R 17960467..17960572 98..203 100 <- Minus
arm_2R 17960717..17960811 1..97 96   Minus