MXO02116.3prime Sequence
878 bp (769 high quality bases) assembled on 2007-01-19
> MXO02116.3prime
ATGGTCTAGAAAGCTTGCCTTGCTGGCAAACTGTATTACGCCATACTCGC
CAGTCAACATCCACTCCTTATCCTTGGCAAACAGTTGGTCCGCCACGCCT
GCACCCAATCCGCAGATCAGATCCGCTTTAATTGTGCGCAGAGTGCAGAG
ATTGGAAGGACGAAAGCCCCTCAAGCAAGTTTCGAAGGACTCCGTGCTGT
CCCAGGAGAAGTCGCCTAACAACTTGCGATAGTTGAGGTCACCCTTGAAG
ATAACCAGTTGCGCCTCCTTCAGGCGGTCGTAGAGTGAGGGATTTACCTC
TGGCATGCGATAGAACTCGTAGGGACTCGTCCAAAAGTGTTCCAGTGGCG
AAAGCTCGAACTTGCCCTCGGTCGTCAAACGCTGCCACTCTCCTCCGACC
TCACTCAGCACAGGATCCGGATGGTCGGCCAGAAATTGAAGTGCCCAGTG
GAAGTCGTGCTCCATCACGTCCGAAATGAACCAAGGAATGGCCTTGGGAT
TGAAGCGCACCTTGGCAGCCAATCCCTTGTCGATAATGTACTCAGCCAGA
ATGAGATCCGTGTACAGCTCATAGCCGGCGTTGTCGAAAATGATGTCCAC
AATGCCCTCTCCGGAGGCTCCGTCCAGGGCTTTCCATACCTCCGCGGTGC
CGTCGATTAGTAGCTTCTCCTCCAAATCCGTAACTTGGTCAAAGGCATTG
CCAGTGGGCTTCACCTGTTTGCCGGAGGTTATGGACAGATCGCATCGGTT
GCCCCACAAATTGAGTTTGATCAACTGGCGGAAGGTGTCCGAGTTTCGTT
CATTGTGCCGCGTAGCCTTGGGCACCGCCAGCATGGCGTCCACGCTCAGT
TTGGTCGCCGTCTGTTCTGTGTGATATC
MXO02116.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-PB | 1308 | CG11474-RB | 458..930 | 866..394 | 2340 | 99.7 | Minus |
CG11474-PA | 1311 | CG11474-RA | 461..933 | 866..394 | 2340 | 99.7 | Minus |
CG11474-PB | 1308 | CG11474-RB | 937..1305 | 387..19 | 1845 | 100 | Minus |
CG11474-PA | 1311 | CG11474-RA | 940..1308 | 387..19 | 1845 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1776 | CG11474-RC | 604..1451 | 866..19 | 4165 | 99.4 | Minus |
CG11474-RA | 1520 | CG11474-RA | 529..1376 | 866..19 | 4165 | 99.4 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:20
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22071765..22072464 | 167..866 | 3425 | 99.3 | Plus |
2R | 25286936 | 2R | 22071559..22071708 | 19..168 | 750 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:21 has no hits.
MXO02116.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:22 Download gff for
MXO02116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 457..1311 | 18..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:47:34 Download gff for
MXO02116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 525..1376 | 19..869 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:02:41 Download gff for
MXO02116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 525..1376 | 19..869 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:02:41 Download gff for
MXO02116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22071559..22071707 | 19..167 | 100 | <- | Plus |
2R | 22071766..22072468 | 168..869 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:47:34 Download gff for
MXO02116.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17959064..17959212 | 19..167 | 100 | <- | Plus |
arm_2R | 17959271..17959973 | 168..869 | 99 | | Plus |
MXO02116.5prime Sequence
752 bp (647 high quality bases) assembled on 2007-01-19
> MXO02116.5prime
CAGTCGACATGGGCAGCGAAACGGATTTTGACGCAAAGAATGGAATCGTG
GACGGACCAACCCCGCCCCACACCGAGCTGGCGGCCCTCTATAAGCAGAG
CTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTTCGACCTTGGCCACCA
TCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTCCTGGCCACATATGGC
GCGGCAGCGGAAGCCGATATTGAACAAACTACAAAGGAGGTTAGACAGCT
GCGGGATGACATCCTGAGCAACGGTCCTTTACTGCCCTTTGGTGAAAATG
ATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAAAAACTGCCCAAGGAG
AAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGCCGAGTGTTATATGTA
CCGCAAAATCTCATCTATTTTCCGGGCCACAGCCCATCTGGCCGCCTACG
ACTACTTCAGCCAGCAGAAACAGACGGCGACCAAACTGAGCGTGGACGCC
ATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGAACGAAACTCGGACAC
CTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCAACCGATGCGATCTGT
CCATAACCTCCGGCAAACAGGTGAAGCCCACTGGCAATGCCTTTGACCAA
GTTACGGATTTGGAGGAGAAGCTACTAATCGACGGCACCGCGGAGGTATG
GAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTGTGGACATCATTTTCG
AC
MXO02116.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:06:59
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-PA | 1311 | CG11474-RA | 1..744 | 9..752 | 3720 | 100 | Plus |
CG11474-PB | 1308 | CG11474-RB | 203..741 | 214..752 | 2695 | 100 | Plus |
CG11474-PB | 1308 | CG11474-RB | 1..196 | 9..204 | 980 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG11474-RC | 1776 | CG11474-RC | 139..887 | 4..752 | 3730 | 99.9 | Plus |
CG11474-RA | 1520 | CG11474-RA | 64..812 | 4..752 | 3730 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:25
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2R | 25286936 | 2R | 22072181..22072633 | 752..300 | 2265 | 100 | Minus |
2R | 25286936 | 2R | 22072961..22073067 | 204..98 | 535 | 100 | Minus |
2R | 25286936 | 2R | 22072798..22072895 | 300..203 | 490 | 100 | Minus |
2R | 25286936 | 2R | 22073211..22073305 | 98..4 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:27 has no hits.
MXO02116.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:23 Download gff for
MXO02116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-PA | 1..744 | 9..752 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:04 Download gff for
MXO02116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 62..812 | 1..752 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:37 Download gff for
MXO02116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG11474-RA | 62..812 | 1..752 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:37 Download gff for
MXO02116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2R | 22072181..22072632 | 301..752 | 100 | <- | Minus |
2R | 22072798..22072894 | 204..300 | 100 | <- | Minus |
2R | 22072962..22073067 | 98..203 | 100 | <- | Minus |
2R | 22073212..22073306 | 1..97 | 96 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:04 Download gff for
MXO02116.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2R | 17959686..17960137 | 301..752 | 100 | <- | Minus |
arm_2R | 17960303..17960399 | 204..300 | 100 | <- | Minus |
arm_2R | 17960467..17960572 | 98..203 | 100 | <- | Minus |
arm_2R | 17960717..17960811 | 1..97 | 96 | | Minus |