MXO02117.3prime Sequence
795 bp (695 high quality bases) assembled on 2007-01-19
> MXO02117.3prime
ATGGTCTAGAAAGCTTGCATGCTGCTCCTGCTCCACAAGCTCGGCAATCA
GGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGAC
AACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACAA
TCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCTT
GTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTAG
AACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCAG
GCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGGG
CGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCAG
TATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGGG
CAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTTT
TGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAGG
TGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGGG
CAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACAC
TCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAAG
TCGAGAGCGGCGAATCGACAGCGCGAACGTGCTGCAGGTCGCTCCTGGGC
AACCCTTTCGATGGCCGCCTCTGCGGAGGACCTGTTCGGGCAGGC
MXO02117.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 451..1227 | 795..19 | 3785 | 99.4 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:08
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 549..1325 | 795..19 | 3825 | 99.5 | Minus |
Wwox-RA | 1502 | CG7221-RA | 549..1325 | 795..19 | 3825 | 99.5 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:06
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 7999847..8000033 | 19..205 | 935 | 100 | Plus |
2L | 23513712 | 2L | 8003284..8003465 | 464..645 | 910 | 100 | Plus |
2L | 23513712 | 2L | 8003525..8003676 | 644..795 | 700 | 97.4 | Plus |
2L | 23513712 | 2L | 8000304..8000436 | 334..466 | 665 | 100 | Plus |
2L | 23513712 | 2L | 8000108..8000239 | 205..336 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:04:07 has no hits.
MXO02117.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:23 Download gff for
MXO02117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 451..1230 | 18..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:21 Download gff for
MXO02117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 549..1329 | 13..795 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:22 Download gff for
MXO02117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 549..1329 | 13..795 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:22 Download gff for
MXO02117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 7999843..8000032 | 13..204 | 98 | <- | Plus |
2L | 8000108..8000236 | 205..333 | 100 | <- | Plus |
2L | 8000304..8000433 | 334..463 | 100 | <- | Plus |
2L | 8003284..8003463 | 464..643 | 100 | <- | Plus |
2L | 8003525..8003676 | 644..795 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:21 Download gff for
MXO02117.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 7999843..8000032 | 13..204 | 98 | <- | Plus |
arm_2L | 8000108..8000236 | 205..333 | 100 | <- | Plus |
arm_2L | 8000304..8000433 | 334..463 | 100 | <- | Plus |
arm_2L | 8003284..8003463 | 464..643 | 100 | <- | Plus |
arm_2L | 8003525..8003676 | 644..795 | 97 | | Plus |
MXO02117.5prime Sequence
833 bp (586 high quality bases) assembled on 2007-01-19
> MXO02117.5prime
CAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATGAGCTGCCA
CCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGCTATGTGAA
CCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGGTCGCTCCA
AACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACTACGATGAG
CAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAACGAACGAA
TGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACAGAATGTGG
CCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGCAGGTGCTG
CACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGCGCAAATTG
TGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGGCTGTGAGA
TCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCATCGAAAGG
ATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTCGCCGCTCT
CGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGACATTAAGC
AGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAGTATTCGCA
CTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTCCAGGTCTC
GCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACTGTTTGACT
ACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGATTTGCCAAC
CTGCCCGTGCAGAATCTGGCAGTGCATCACCTT
MXO02117.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:18
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG7221-PA | 1230 | CG7221-RA | 1..825 | 9..833 | 4075 | 99.7 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:31
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Wwox-RB | 1440 | CG7221-RB | 94..923 | 4..833 | 4105 | 99.6 | Plus |
Wwox-RA | 1502 | CG7221-RA | 94..923 | 4..833 | 4105 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
2L | 23513712 | 2L | 8003525..8004034 | 610..101 | 2535 | 99.8 | Minus |
2L | 23513712 | 2L | 8003284..8003465 | 790..609 | 910 | 100 | Minus |
2L | 23513712 | 2L | 8004097..8004193 | 100..4 | 470 | 99 | Minus |
2L | 23513712 | 2L | 8000391..8000436 | 833..788 | 215 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:29:30 has no hits.
MXO02117.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:24 Download gff for
MXO02117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG7221-PA | 1..825 | 9..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for
MXO02117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 91..923 | 1..833 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:22 Download gff for
MXO02117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Wwox-RA | 91..923 | 1..833 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:22 Download gff for
MXO02117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
2L | 8000391..8000433 | 791..833 | 97 | <- | Minus |
2L | 8003284..8003463 | 611..790 | 100 | <- | Minus |
2L | 8003525..8004034 | 101..610 | 99 | <- | Minus |
2L | 8004097..8004195 | 1..100 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for
MXO02117.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_2L | 8000391..8000433 | 791..833 | 97 | <- | Minus |
arm_2L | 8003284..8003463 | 611..790 | 100 | <- | Minus |
arm_2L | 8003525..8004034 | 101..610 | 99 | <- | Minus |
arm_2L | 8004097..8004195 | 1..100 | 97 | | Minus |