Clone MXO02117 Report

Search the DGRC for MXO02117

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:17
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptWwox-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02117.3prime Sequence

795 bp (695 high quality bases) assembled on 2007-01-19

> MXO02117.3prime
ATGGTCTAGAAAGCTTGCATGCTGCTCCTGCTCCACAAGCTCGGCAATCA
GGTTCTCGCTCAGCTTCCACAGTTGCTGCTGCAGTGCAGCACTTTTGGAC
AACTTGCTGGGCTCGCAGAAGAAGCAATTGTTGAAGTACAGTCCAGACAA
TCCGGTCAGCTCGTTGGCCGTCGCACAGTAGATACTCGTGGCAGCCGCTT
GTTGCAGCGACTTGGTGAAGGGACGCACAATGGCAAAGAGCAGGCGGTAG
AACCAATAGTTTCGTGACAAATCGCTGGACACCATATTGCCCGGATGCAG
GCTAAAAACAGAAATGCCTCGCTGCTTCCAACGCTGGGCGAGCTCCTGGG
CGAACAAGACATTGCATAGCTTGGCATTGTTGTAGGCCATCATGCTCCAG
TATTTCTCCGGCGGCGGCGAAAGGTGATGCACTGCCAGATTCTCCACGGG
CAGGTTGGCAAATCTGTGCGACTCGGATGACAGCACAATGATCCGTGTTT
TGTAGTCAAACAGTGTCTCCAGTTGCAATGTGAGGTAGAAATGCGACAGG
TGCGAGACCTGGAATGTGGTCTCCAGACCATCCACGGTCCTCGTGTAGGG
CAGTGCGAATACTCCGGCATTAAGGATGAGATAATCAATGTGGCTAACAC
TCTGCTTAATTTCTTCCACAAATCGCTGAACTGAACGCAAAGAGCTCAAG
TCGAGAGCGGCGAATCGACAGCGCGAACGTGCTGCAGGTCGCTCCTGGGC
AACCCTTTCGATGGCCGCCTCTGCGGAGGACCTGTTCGGGCAGGC

MXO02117.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:09
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 451..1227 795..19 3785 99.4 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:04:08
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 549..1325 795..19 3825 99.5 Minus
Wwox-RA 1502 CG7221-RA 549..1325 795..19 3825 99.5 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:04:06
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7999847..8000033 19..205 935 100 Plus
2L 23513712 2L 8003284..8003465 464..645 910 100 Plus
2L 23513712 2L 8003525..8003676 644..795 700 97.4 Plus
2L 23513712 2L 8000304..8000436 334..466 665 100 Plus
2L 23513712 2L 8000108..8000239 205..336 660 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:04:07 has no hits.

MXO02117.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:23 Download gff for MXO02117.3prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 451..1230 18..795 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:23:21 Download gff for MXO02117.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 549..1329 13..795 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:50:22 Download gff for MXO02117.3prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 549..1329 13..795 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:50:22 Download gff for MXO02117.3prime
Subject Subject Range Query Range Percent Splice Strand
2L 7999843..8000032 13..204 98 <- Plus
2L 8000108..8000236 205..333 100 <- Plus
2L 8000304..8000433 334..463 100 <- Plus
2L 8003284..8003463 464..643 100 <- Plus
2L 8003525..8003676 644..795 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:23:21 Download gff for MXO02117.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7999843..8000032 13..204 98 <- Plus
arm_2L 8000108..8000236 205..333 100 <- Plus
arm_2L 8000304..8000433 334..463 100 <- Plus
arm_2L 8003284..8003463 464..643 100 <- Plus
arm_2L 8003525..8003676 644..795 97   Plus

MXO02117.5prime Sequence

833 bp (586 high quality bases) assembled on 2007-01-19

> MXO02117.5prime
CAGTCGACATGATAGCCCTACCCGACACAGATAGCGAGGATGAGCTGCCA
CCCGGCTGGGAGGAACGTGCCACCGATGACGGCACCGTTTGCTATGTGAA
CCAGCAGGGAAAAACATCACAGTGGACACATCCACGTACGGGTCGCTCCA
AACGGATCACGGGCGAATTACCCTTGGGCTGGGAGAAGTACTACGATGAG
CAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGACGCAGCAACGAACGAA
TGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGCCCACACAGAATGTGG
CCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACGGCACTGCAGGTGCTG
CACGGCAAGGATTTGCATGGACGCACCGCGCTGATAACGGGCGCAAATTG
TGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCCATCACGGCTGTGAGA
TCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAGGCGGCCATCGAAAGG
ATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTGTCGATTCGCCGCTCT
CGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTGTGGAAGACATTAAGC
AGAGTGTTAGCCACATTGATTATCTCATCCTTAATGCCGGAGTATTCGCA
CTGCCCTACACGAGGACCGTGGATGGTCTGGAGACCACATTCCAGGTCTC
GCACCTGTCGCATTTCTACCTCACATTGCAACTGGAGACACTGTTTGACT
ACAAAACACGGATCATTGTGCTGTCATCCGAGTCGCACAGATTTGCCAAC
CTGCCCGTGCAGAATCTGGCAGTGCATCACCTT

MXO02117.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:18
Subject Length Description Subject Range Query Range Score Percent Strand
CG7221-PA 1230 CG7221-RA 1..825 9..833 4075 99.7 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:31
Subject Length Description Subject Range Query Range Score Percent Strand
Wwox-RB 1440 CG7221-RB 94..923 4..833 4105 99.6 Plus
Wwox-RA 1502 CG7221-RA 94..923 4..833 4105 99.6 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:29
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 8003525..8004034 610..101 2535 99.8 Minus
2L 23513712 2L 8003284..8003465 790..609 910 100 Minus
2L 23513712 2L 8004097..8004193 100..4 470 99 Minus
2L 23513712 2L 8000391..8000436 833..788 215 97.8 Minus
Blast to na_te.dros performed on 2014-11-28 19:29:30 has no hits.

MXO02117.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:24 Download gff for MXO02117.5prime
Subject Subject Range Query Range Percent Splice Strand
CG7221-PA 1..825 9..833 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:27 Download gff for MXO02117.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 91..923 1..833 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:22 Download gff for MXO02117.5prime
Subject Subject Range Query Range Percent Splice Strand
Wwox-RA 91..923 1..833 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:22 Download gff for MXO02117.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 8000391..8000433 791..833 97 <- Minus
2L 8003284..8003463 611..790 100 <- Minus
2L 8003525..8004034 101..610 99 <- Minus
2L 8004097..8004195 1..100 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:27 Download gff for MXO02117.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 8000391..8000433 791..833 97 <- Minus
arm_2L 8003284..8003463 611..790 100 <- Minus
arm_2L 8003525..8004034 101..610 99 <- Minus
arm_2L 8004097..8004195 1..100 97   Minus