Clone Sequence Records
MXO02120.3prime Sequence
438 bp (438 high quality bases) assembled on 2007-01-19
> MXO02120.3prime
ATGGTCTAGAAAGCTTGCCAGCTCTTCAGATCCAGAGCGCGGTTCGATTT
TTACCAACTCCGTATCGAAGACGAGCACCGCATTGGGGGGAATCTTTCCG
CCACCCGCTCCACTGGCTCCGTATCCCAGCTCAGGCGGAATCGTCAGCTT
TCGCTGCTCACCCTCACACATACCAAGGATTCCCTGATCCCAGCCCTTGA
TCACCTGCCGAGCTCCCAGGGTAAAGGAGAAGGGAGTGCCGCGGGAGTAG
CTGCTATCGAACTCTGTTCCATCCTGCAGTGCTCCTCTGTAGTGCACGTG
GACGAGATCGCCGCCCTTGGCCTTCCGGGTGCAGTTCTCCACCCGCTTCT
TAATGCCAATCTTCACTTTCGGATCGCTGGCACCGGAGGCGGCCACAAAA
GCGCAGATTAACAAAATATAAGTTAACTTCATGTCGAC
MXO02120.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14715-PA | 417 | CG14715-RA | 1..414 | 432..19 | 2045 | 99.7 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:31:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14715-RA | 640 | CG14715-RA | 62..475 | 432..19 | 2055 | 99.8 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:31:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11674492..11674758 | 285..19 | 1335 | 100 | Minus |
| 3R | 32079331 | 3R | 11674282..11674429 | 432..285 | 725 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:31:42 has no hits.
MXO02120.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:25 Download gff for
MXO02120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-PA | 1..417 | 15..432 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:35:56 Download gff for
MXO02120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 56..481 | 13..438 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:24 Download gff for
MXO02120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 56..481 | 13..438 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:24 Download gff for
MXO02120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11674276..11674428 | 286..438 | 96 | -> | Minus |
| 3R | 11674492..11674764 | 13..285 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:35:56 Download gff for
MXO02120.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7499998..7500150 | 286..438 | 96 | -> | Minus |
| arm_3R | 7500214..7500486 | 13..285 | 99 | | Minus |
MXO02120.5prime Sequence
438 bp (438 high quality bases) assembled on 2007-01-19
> MXO02120.5prime
CAGTCGACATGAAGTTAACTTATATTTTGTTAATCTGCGCTTTTGTGGCC
GCCTCCGCTGCCAGCGATCCGAAAGTGAAGATTGGCATTAAGAAGCGGGT
GGAGAACTGCACCCGGAAGGCCAAGGGCGGCGATCTCGTCCACGTGCACT
ACAGAGGAGCACTGCAGGATGGAACAGAGTTCGATAGCAGCTACTCCCGC
GGCACTCCCTTCTCCTTTACCCTGGGAGCTCGGCAGGTGATCAAGGGCTG
GGATCAGGGAATCCTTGGTATGTGTGAGGGTGAGCAGCGAAAGCTGACGA
TTCCGCCTGAGCTGGGATACGGAGCCAGTGGAGCGGGTGGCGGAAAGATT
CCCCCCAATGCGGTGCTCGTCTTCGATACGGAGTTGGTAAAAATCGAACC
GCGCTCTGGATCTGAAGAGCTGGCAAGCTTTCTAGACC
MXO02120.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:07:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14715-PA | 417 | CG14715-RA | 1..414 | 9..422 | 2070 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG14715-RA | 640 | CG14715-RA | 62..475 | 9..422 | 2070 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:36
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11674492..11674758 | 156..422 | 1335 | 100 | Plus |
| 3R | 32079331 | 3R | 11674282..11674429 | 9..156 | 740 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:25:37 has no hits.
MXO02120.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:25 Download gff for
MXO02120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-PA | 1..417 | 9..426 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:02:23 Download gff for
MXO02120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 62..481 | 9..428 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:58:47 Download gff for
MXO02120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14715-RA | 62..481 | 9..428 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:58:47 Download gff for
MXO02120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11674282..11674428 | 9..155 | 100 | -> | Plus |
| 3R | 11674492..11674764 | 156..428 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:02:23 Download gff for
MXO02120.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7500004..7500150 | 9..155 | 100 | -> | Plus |
| arm_3R | 7500214..7500486 | 156..428 | 99 | | Plus |
