Clone MXO02122 Report

Search the DGRC for MXO02122

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:22
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptPbprp2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02122.3prime Sequence

474 bp (474 high quality bases) assembled on 2007-01-19

> MXO02122.3prime
ATGGTCTAGAAAGCTTGCGTGCTCCTCCAGCTCGAGTCCATGCTCCTTCA
TTTGCTCGTAAATGCATTCCTCGTAGGCGAAGGCAGCGTCGCAATGATCC
TCGGGTGTCTCGATGGCCTCGCACTTGGCCACCACCTCGGCGGGAGCGTC
TTCCTTCTCTGCATCGTGCTTGCTCATGACCTTGACCAACTCGATGGCGT
GTTCCTTGTTCAGCTTACCGGATTCATCCATTATCTGCAGCTTTTTCATC
ACGCAGGCGCGCAGGCACTTGGCCTCGTGTCTCTCGGGCAGGTCGTGGCT
CATCAGCTGCTCCACATCCTCATCGGTGGCTCCCGTCTCAGCCTTGCACT
CGTTGGCCAGCTCGGCGGCGTGGTCCCTGTTGATCTCCTCGTGCGGCTTG
GCGCTGGTGGCGCCCAGGCAGAGGATGCCCACTAGGAGCAGGACGGTCAG
GTGAACCAGATGCGACATGTCGAC

MXO02122.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:20
Subject Length Description Subject Range Query Range Score Percent Strand
CG1668-PA 453 Pbprp2-RA 1..450 468..19 2250 100 Minus
CG1668-PB 453 Pbprp2-RB 1..450 468..19 2250 100 Minus
CG6641-PA 432 Pbprp5-RA 189..215 271..245 135 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:01
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19d-RB 624 CG1668-RB 44..498 473..19 2260 99.8 Minus
Obp19d-RA 1101 CG1668-RA 521..975 473..19 2260 99.8 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:00
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20420133..20420285 473..321 750 99.3 Minus
X 23542271 X 20420577..20420713 231..95 685 100 Minus
X 23542271 X 20420415..20420504 321..232 450 100 Minus
X 23542271 X 20420778..20420853 94..19 380 100 Minus
Blast to na_te.dros performed on 2014-11-28 20:28:00 has no hits.

MXO02122.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:26 Download gff for MXO02122.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1668-PB 1..453 16..468 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:49 Download gff for MXO02122.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 520..975 19..474 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:13 Download gff for MXO02122.3prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 520..975 19..474 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:13 Download gff for MXO02122.3prime
Subject Subject Range Query Range Percent Splice Strand
X 20420132..20420285 321..474 98 -> Minus
X 20420416..20420504 232..320 100 -> Minus
X 20420577..20420713 95..231 100 -> Minus
X 20420778..20420853 19..94 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:49 Download gff for MXO02122.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20291159..20291312 321..474 98 -> Minus
arm_X 20291443..20291531 232..320 100 -> Minus
arm_X 20291604..20291740 95..231 100 -> Minus
arm_X 20291805..20291880 19..94 100   Minus

MXO02122.5prime Sequence

474 bp (474 high quality bases) assembled on 2007-01-19

> MXO02122.5prime
CAGTCGACATGTCGCATCTGGTTCACCTGACCGTCCTGCTCCTAGTGGGC
ATCCTCTGCCTGGGCGCCACCAGCGCCAAGCCGCACGAGGAGATCAACAG
GGACCACGCCGCCGAGCTGGCCAACGAGTGCAAGGCTGAGACGGGAGCCA
CCGATGAGGATGTGGAGCAGCTGATGAGCCACGACCTGCCCGAGAGACAC
GAGGCCAAGTGCCTGCGCGCCTGCGTGATGAAAAAGCTGCAGATAATGGA
TGAATCCGGTAAGCTGAACAAGGAACACGCCATCGAGTTGGTCAAGGTCA
TGAGCAAGCACGATGCAGAGAAGGAAGACGCTCCCGCCGAGGTGGTGGCC
AAGTGCGAGGCCATCGAGACACCCGAGGATCATTGCGACGCTGCCTTCGC
CTACGAGGAATGCATTTACGAGCAAATGAAGGAGCATGGACTCGAGCTGG
AGGAGCACGCAAGCTTTCTAGACC

MXO02122.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:27
Subject Length Description Subject Range Query Range Score Percent Strand
CG1668-PA 453 Pbprp2-RA 1..450 9..458 2250 100 Plus
CG1668-PB 453 Pbprp2-RB 1..450 9..458 2250 100 Plus
CG6641-PA 432 Pbprp5-RA 189..215 206..232 135 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:13
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19d-RB 624 CG1668-RB 44..498 4..458 2260 99.8 Plus
Obp19d-RA 1101 CG1668-RA 521..975 4..458 2260 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20420133..20420285 4..156 750 99.3 Plus
X 23542271 X 20420577..20420713 246..382 685 100 Plus
X 23542271 X 20420415..20420504 156..245 450 100 Plus
X 23542271 X 20420778..20420853 383..458 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:28:13 has no hits.

MXO02122.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:27 Download gff for MXO02122.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1668-PB 1..453 9..461 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:53 Download gff for MXO02122.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 517..975 1..458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:22 Download gff for MXO02122.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 517..975 1..458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:22 Download gff for MXO02122.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20420129..20420285 1..156 98 -> Plus
X 20420416..20420504 157..245 100 -> Plus
X 20420577..20420713 246..382 100 -> Plus
X 20420778..20420853 383..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:53 Download gff for MXO02122.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20291156..20291312 1..156 98 -> Plus
arm_X 20291443..20291531 157..245 100 -> Plus
arm_X 20291604..20291740 246..382 100 -> Plus
arm_X 20291805..20291880 383..458 100   Plus