Clone Sequence Records
MXO02123.3prime Sequence
792 bp (769 high quality bases) assembled on 2007-01-19
> MXO02123.3prime
ATGGTCTAGAAAGCTTGCAAGGCGCCGGAAAATGGCCAGAAAATGATCGC
CCTTGTTTCGAACCACCTTAGCGCCCTCCTCGCTGCTTTGGTACAGCTTC
GGGGTGATGGGATCAGCATTGGCCTCCTCTTCGGTAAGACGCTCGTACAG
CGGATGCTCCTCCATATGTGTCACTATCCACTTGTGCAAGTCCTCAACGT
CCGTCATGGTGTACAACAGACCCCCCTTCCTGAGGATATAGGCATATTCG
GAGAGTAGAGCCTGGTTGATAATACGCCACTTGTGCTTGGCGCGCTTGAA
ATGTGGGTCCGGGTAGAGGAAGAACATCTTCTCCAGCTGGCCCTTTACGA
AGTAGTTGGGCAGATACTTCATGGCGTTGGTGCGTAAGCAGGCAATGTTC
TGGTATGCACCCGTATCCGCGCATCGTCGACGCAGTGCCGCAATCCGGTC
CACCACGTAGTCCGACACCTTGACGCGGATTTCCATGCCGATGGACAGCT
TCTCGGGGAACATCTCCCCCAGGGTGACGAGAAAGCCGCCATAGCCGCAG
CCTATGTCCGCAAAACTTACCTGCTGGCCCTGCTGAATGCCTGGGTACAT
GGAGCGCCAGTCCACATCTTCCGGGCGAGCAGGATAGTCGAAGCTGTGGT
CCGCAATGGGATTCGAGTGCGCACGCTGGCGGTAGTAGCGCTTTTGTGGC
AACCCCGTCACCGCCGACGTGGGGTTTAGCACATCCGGCTCCTGGTTCTG
GCCCTGATCCTGAGCCTGTCCACCGGTGGCCACCATGTCGAC
MXO02123.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:35
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-PA | 771 | CG4045-RA | 1..768 | 786..19 | 3840 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:42
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 923 | CG4045-RA | 81..848 | 786..19 | 3840 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:40
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2075206..2075618 | 222..634 | 2065 | 100 | Plus |
X | 23542271 | X | 2075669..2075820 | 635..786 | 760 | 100 | Plus |
X | 23542271 | X | 2075038..2075140 | 121..223 | 515 | 100 | Plus |
X | 23542271 | X | 2074870..2074971 | 19..120 | 510 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:29:41 has no hits.
MXO02123.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:27 Download gff for
MXO02123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 18..786 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:32 Download gff for
MXO02123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 78..848 | 19..792 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26 Download gff for
MXO02123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 78..848 | 19..792 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:26 Download gff for
MXO02123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2074870..2074971 | 19..120 | 100 | <- | Plus |
X | 2075038..2075139 | 121..222 | 100 | <- | Plus |
X | 2075207..2075618 | 223..634 | 100 | <- | Plus |
X | 2075669..2075823 | 635..792 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:32 Download gff for
MXO02123.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1968903..1969004 | 19..120 | 100 | <- | Plus |
arm_X | 1969071..1969172 | 121..222 | 100 | <- | Plus |
arm_X | 1969240..1969651 | 223..634 | 100 | <- | Plus |
arm_X | 1969702..1969856 | 635..792 | 98 | | Plus |
MXO02123.5prime Sequence
792 bp (702 high quality bases) assembled on 2007-01-19
> MXO02123.5prime
CAGTCGACATGGTGGCCACCGGTGGACAGGCTCAGGATCAGGGCCAGAAC
CAGGAGCCGGATGTGCTAAACCCCACGTCGGCGGTGACGGGGTTGCCACA
AAAGCGCTACTACCGCCAGCGTGCGCACTCGAATCCCATTGCGGACCACA
GCTTCGACTATCCTGCTCGCCCGGAAGATGTGGACTGGCGCTCCATGTAC
CCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTGCGGACATAGGCTGCGG
CTATGGCGGCTTTCTCGTCACCCTGGGGGAGATGTTCCCCGAGAAGCTGT
CCATCGGCATGGAAATCCGCGTCAAGGTGTCGGACTACGTGGTGGACCGG
ATTGCGGCACTGCGTCGACGATGCGCGGATACGGGTGCATACCAGAACAT
TGCCTGCTTACGCACCAACGCCATGAAGTATCTGCCCAACTACTTCGTAA
AGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCCGGACCCACATTTCAAG
CGCGCCAAGCACAAGTGGCGTATTATCAACCAGGCTCTACTCTCCGAATA
TGCCTATATCCTCAGGAAGGGGGGTCTGTTGTACACCATGACGGACGTTG
AGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCATCCGCTGTAC
GAGCGTCTTACCGAAGAGGAGGCCAATGCTGATCCCATCACCCCGAAGCT
GTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTTCGAAACAAGGGCGATC
ATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTTTCTAGACC
MXO02123.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:44
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-PA | 771 | CG4045-RA | 1..768 | 9..776 | 3840 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:00
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG4045-RA | 923 | CG4045-RA | 81..848 | 9..776 | 3840 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:58
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 2075206..2075618 | 573..161 | 2065 | 100 | Minus |
X | 23542271 | X | 2075669..2075820 | 160..9 | 760 | 100 | Minus |
X | 23542271 | X | 2075038..2075140 | 674..572 | 515 | 100 | Minus |
X | 23542271 | X | 2074870..2074971 | 776..675 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:47:59 has no hits.
MXO02123.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for
MXO02123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-PA | 1..771 | 9..777 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:34 Download gff for
MXO02123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 75..848 | 1..776 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:20 Download gff for
MXO02123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG4045-RA | 75..848 | 1..776 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:20 Download gff for
MXO02123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 2074870..2074971 | 675..776 | 100 | <- | Minus |
X | 2075038..2075139 | 573..674 | 100 | <- | Minus |
X | 2075207..2075618 | 161..572 | 100 | <- | Minus |
X | 2075669..2075824 | 1..160 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:34 Download gff for
MXO02123.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 1968903..1969004 | 675..776 | 100 | <- | Minus |
arm_X | 1969071..1969172 | 573..674 | 100 | <- | Minus |
arm_X | 1969240..1969651 | 161..572 | 100 | <- | Minus |
arm_X | 1969702..1969857 | 1..160 | 97 | | Minus |