Clone MXO02123 Report

Search the DGRC for MXO02123

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:23
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG4045-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02123.3prime Sequence

792 bp (769 high quality bases) assembled on 2007-01-19

> MXO02123.3prime
ATGGTCTAGAAAGCTTGCAAGGCGCCGGAAAATGGCCAGAAAATGATCGC
CCTTGTTTCGAACCACCTTAGCGCCCTCCTCGCTGCTTTGGTACAGCTTC
GGGGTGATGGGATCAGCATTGGCCTCCTCTTCGGTAAGACGCTCGTACAG
CGGATGCTCCTCCATATGTGTCACTATCCACTTGTGCAAGTCCTCAACGT
CCGTCATGGTGTACAACAGACCCCCCTTCCTGAGGATATAGGCATATTCG
GAGAGTAGAGCCTGGTTGATAATACGCCACTTGTGCTTGGCGCGCTTGAA
ATGTGGGTCCGGGTAGAGGAAGAACATCTTCTCCAGCTGGCCCTTTACGA
AGTAGTTGGGCAGATACTTCATGGCGTTGGTGCGTAAGCAGGCAATGTTC
TGGTATGCACCCGTATCCGCGCATCGTCGACGCAGTGCCGCAATCCGGTC
CACCACGTAGTCCGACACCTTGACGCGGATTTCCATGCCGATGGACAGCT
TCTCGGGGAACATCTCCCCCAGGGTGACGAGAAAGCCGCCATAGCCGCAG
CCTATGTCCGCAAAACTTACCTGCTGGCCCTGCTGAATGCCTGGGTACAT
GGAGCGCCAGTCCACATCTTCCGGGCGAGCAGGATAGTCGAAGCTGTGGT
CCGCAATGGGATTCGAGTGCGCACGCTGGCGGTAGTAGCGCTTTTGTGGC
AACCCCGTCACCGCCGACGTGGGGTTTAGCACATCCGGCTCCTGGTTCTG
GCCCTGATCCTGAGCCTGTCCACCGGTGGCCACCATGTCGAC

MXO02123.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:35
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-PA 771 CG4045-RA 1..768 786..19 3840 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:29:42
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-RA 923 CG4045-RA 81..848 786..19 3840 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:29:40
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2075206..2075618 222..634 2065 100 Plus
X 23542271 X 2075669..2075820 635..786 760 100 Plus
X 23542271 X 2075038..2075140 121..223 515 100 Plus
X 23542271 X 2074870..2074971 19..120 510 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:29:41 has no hits.

MXO02123.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:27 Download gff for MXO02123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-PA 1..771 18..786 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:32 Download gff for MXO02123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 78..848 19..792 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:26 Download gff for MXO02123.3prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 78..848 19..792 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:26 Download gff for MXO02123.3prime
Subject Subject Range Query Range Percent Splice Strand
X 2074870..2074971 19..120 100 <- Plus
X 2075038..2075139 121..222 100 <- Plus
X 2075207..2075618 223..634 100 <- Plus
X 2075669..2075823 635..792 98   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:32 Download gff for MXO02123.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1968903..1969004 19..120 100 <- Plus
arm_X 1969071..1969172 121..222 100 <- Plus
arm_X 1969240..1969651 223..634 100 <- Plus
arm_X 1969702..1969856 635..792 98   Plus

MXO02123.5prime Sequence

792 bp (702 high quality bases) assembled on 2007-01-19

> MXO02123.5prime
CAGTCGACATGGTGGCCACCGGTGGACAGGCTCAGGATCAGGGCCAGAAC
CAGGAGCCGGATGTGCTAAACCCCACGTCGGCGGTGACGGGGTTGCCACA
AAAGCGCTACTACCGCCAGCGTGCGCACTCGAATCCCATTGCGGACCACA
GCTTCGACTATCCTGCTCGCCCGGAAGATGTGGACTGGCGCTCCATGTAC
CCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTGCGGACATAGGCTGCGG
CTATGGCGGCTTTCTCGTCACCCTGGGGGAGATGTTCCCCGAGAAGCTGT
CCATCGGCATGGAAATCCGCGTCAAGGTGTCGGACTACGTGGTGGACCGG
ATTGCGGCACTGCGTCGACGATGCGCGGATACGGGTGCATACCAGAACAT
TGCCTGCTTACGCACCAACGCCATGAAGTATCTGCCCAACTACTTCGTAA
AGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCCGGACCCACATTTCAAG
CGCGCCAAGCACAAGTGGCGTATTATCAACCAGGCTCTACTCTCCGAATA
TGCCTATATCCTCAGGAAGGGGGGTCTGTTGTACACCATGACGGACGTTG
AGGACTTGCACAAGTGGATAGTGACACATATGGAGGAGCATCCGCTGTAC
GAGCGTCTTACCGAAGAGGAGGCCAATGCTGATCCCATCACCCCGAAGCT
GTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTTCGAAACAAGGGCGATC
ATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTTTCTAGACC

MXO02123.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:44
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-PA 771 CG4045-RA 1..768 9..776 3840 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:00
Subject Length Description Subject Range Query Range Score Percent Strand
CG4045-RA 923 CG4045-RA 81..848 9..776 3840 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:47:58
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 2075206..2075618 573..161 2065 100 Minus
X 23542271 X 2075669..2075820 160..9 760 100 Minus
X 23542271 X 2075038..2075140 674..572 515 100 Minus
X 23542271 X 2074870..2074971 776..675 510 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:47:59 has no hits.

MXO02123.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for MXO02123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-PA 1..771 9..777 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:34 Download gff for MXO02123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 75..848 1..776 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:20 Download gff for MXO02123.5prime
Subject Subject Range Query Range Percent Splice Strand
CG4045-RA 75..848 1..776 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:20 Download gff for MXO02123.5prime
Subject Subject Range Query Range Percent Splice Strand
X 2074870..2074971 675..776 100 <- Minus
X 2075038..2075139 573..674 100 <- Minus
X 2075207..2075618 161..572 100 <- Minus
X 2075669..2075824 1..160 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:34 Download gff for MXO02123.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 1968903..1969004 675..776 100 <- Minus
arm_X 1969071..1969172 573..674 100 <- Minus
arm_X 1969240..1969651 161..572 100 <- Minus
arm_X 1969702..1969857 1..160 97   Minus