Clone MXO02124 Report

Search the DGRC for MXO02124

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:24
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptND23-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02124.3prime Sequence

675 bp (668 high quality bases) assembled on 2007-01-19

> MXO02124.3prime
ATGGTCTAGAAAGCTTGCACGATAGAGATGGTCGGCCTGCAAGTTAGAGG
CAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTTG
TACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCTC
GACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATGC
ACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGCG
CGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGCA
TAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGGG
CATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATAG
TTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATCC
ACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATGT
CGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTTG
GGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCCG
GGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAAA
TTCGCATAGTTAGCGACATGTCGAC

MXO02124.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:52
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..651 669..19 3255 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:30
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..739 669..19 3255 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:28
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 177..630 2270 100 Plus
3R 32079331 3R 15836128..15836288 19..179 805 100 Plus
3R 32079331 3R 15836989..15837029 629..669 205 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:15:29 has no hits.

MXO02124.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for MXO02124.3prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 15..669 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:44 Download gff for MXO02124.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 80..749 8..675 98   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:25 Download gff for MXO02124.3prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 80..749 8..675 98   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:25 Download gff for MXO02124.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836118..15836286 8..177 97 <- Plus
3R 15836355..15836806 178..629 100 <- Plus
3R 15836990..15837035 630..675 91   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:44 Download gff for MXO02124.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661840..11662008 8..177 97 <- Plus
arm_3R 11662077..11662528 178..629 100 <- Plus
arm_3R 11662712..11662757 630..675 91   Plus

MXO02124.5prime Sequence

675 bp (675 high quality bases) assembled on 2007-01-19

> MXO02124.5prime
CAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGCGCAACGGA
CAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCCCAGCGAGC
AGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTATGTAAACA
ACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTGCTGCATCC
ACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACCCTGGCGCA
CATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAAGGGACCAC
TGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATCCCAGTGGA
GAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGCCCCGCACA
GGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAGACGTACCA
CACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGATTCTGTCAG
GAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTCGAGTTCTC
CACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCTTCTCTGCA
ACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGGCCGACCAT
CTCTATCGTGCAAGCTTTCTAGACC

MXO02124.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:01
Subject Length Description Subject Range Query Range Score Percent Strand
CG3944-PA 654 ND23-RA 1..651 9..659 3255 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:10
Subject Length Description Subject Range Query Range Score Percent Strand
ND23-RA 819 CG3944-RA 89..739 9..659 3255 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:09
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 15836354..15836807 501..48 2270 100 Minus
3R 32079331 3R 15836128..15836288 659..499 805 100 Minus
3R 32079331 3R 15836989..15837029 49..9 205 100 Minus
Blast to na_te.dros performed on 2014-11-28 21:48:10 has no hits.

MXO02124.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for MXO02124.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3944-PA 1..654 9..663 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:40 Download gff for MXO02124.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 9..670 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:27 Download gff for MXO02124.5prime
Subject Subject Range Query Range Percent Splice Strand
ND23-RA 89..749 9..670 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:27 Download gff for MXO02124.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 15836118..15836286 501..670 97 <- Minus
3R 15836355..15836806 49..500 100 <- Minus
3R 15836990..15837029 9..48 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:40 Download gff for MXO02124.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 11661840..11662008 501..670 97 <- Minus
arm_3R 11662077..11662528 49..500 100 <- Minus
arm_3R 11662712..11662751 9..48 100   Minus