Clone Sequence Records
MXO02124.3prime Sequence
675 bp (668 high quality bases) assembled on 2007-01-19
> MXO02124.3prime
ATGGTCTAGAAAGCTTGCACGATAGAGATGGTCGGCCTGCAAGTTAGAGG
CAATCTCGGACTCCCACTTGTCGCCGTTGCAGAGAAGCTTCTCCTTGTTG
TACAGCAGCTCCTCGTGCGTCTCCGTGGAGAACTCGAAGTTGGGTCCCTC
GACGATGGCGTCCACGGGACAGGCTTCCTGACAGAATCCGCAGTAGATGC
ACTTGGTCATGTCGATATCGTAGCGTGTGGTACGTCTGCTGCCATCCGCG
CGCTCCTCCGCTTCGATGGTGATCGCCTGTGCGGGGCAAATAGCCTCGCA
TAGCTTGCAAGCGATGCAGCGCTCCTCTCCACTGGGATAACGACGAAGGG
CATGTTCTCCGCGGAATCGCGGGCTCAGTGGTCCCTTTTCAAAGGGATAG
TTGATAGTGGCCGGTTCCTTGAAGATGTGCGCCAGGGTGACGGCAAATCC
ACGTAAGAGTTCACCGAAGAACATGGTGGATGCAGCACGGTCCGTGATGT
CGGCAAACTCCATGCTCAGTTCCTTGTTGTTTACATACACATAGCCCTTG
GGAACCTCGACGATATCTTTGGGTTCTGCTCGCTGGGCGGCCAGCAGCCG
GGCTCCATGGCTGCCAAACAGGCGCTGTCCGTTGCGCGATGCGGTGAAAA
TTCGCATAGTTAGCGACATGTCGAC
MXO02124.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:08:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..651 | 669..19 | 3255 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:15:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..739 | 669..19 | 3255 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:15:28
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 177..630 | 2270 | 100 | Plus |
3R | 32079331 | 3R | 15836128..15836288 | 19..179 | 805 | 100 | Plus |
3R | 32079331 | 3R | 15836989..15837029 | 629..669 | 205 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:15:29 has no hits.
MXO02124.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for
MXO02124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 15..669 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:32:44 Download gff for
MXO02124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 80..749 | 8..675 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:25 Download gff for
MXO02124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 80..749 | 8..675 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:25 Download gff for
MXO02124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836118..15836286 | 8..177 | 97 | <- | Plus |
3R | 15836355..15836806 | 178..629 | 100 | <- | Plus |
3R | 15836990..15837035 | 630..675 | 91 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:32:44 Download gff for
MXO02124.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661840..11662008 | 8..177 | 97 | <- | Plus |
arm_3R | 11662077..11662528 | 178..629 | 100 | <- | Plus |
arm_3R | 11662712..11662757 | 630..675 | 91 | | Plus |
MXO02124.5prime Sequence
675 bp (675 high quality bases) assembled on 2007-01-19
> MXO02124.5prime
CAGTCGACATGTCGCTAACTATGCGAATTTTCACCGCATCGCGCAACGGA
CAGCGCCTGTTTGGCAGCCATGGAGCCCGGCTGCTGGCCGCCCAGCGAGC
AGAACCCAAAGATATCGTCGAGGTTCCCAAGGGCTATGTGTATGTAAACA
ACAAGGAACTGAGCATGGAGTTTGCCGACATCACGGACCGTGCTGCATCC
ACCATGTTCTTCGGTGAACTCTTACGTGGATTTGCCGTCACCCTGGCGCA
CATCTTCAAGGAACCGGCCACTATCAACTATCCCTTTGAAAAGGGACCAC
TGAGCCCGCGATTCCGCGGAGAACATGCCCTTCGTCGTTATCCCAGTGGA
GAGGAGCGCTGCATCGCTTGCAAGCTATGCGAGGCTATTTGCCCCGCACA
GGCGATCACCATCGAAGCGGAGGAGCGCGCGGATGGCAGCAGACGTACCA
CACGCTACGATATCGACATGACCAAGTGCATCTACTGCGGATTCTGTCAG
GAAGCCTGTCCCGTGGACGCCATCGTCGAGGGACCCAACTTCGAGTTCTC
CACGGAGACGCACGAGGAGCTGCTGTACAACAAGGAGAAGCTTCTCTGCA
ACGGCGACAAGTGGGAGTCCGAGATTGCCTCTAACTTGCAGGCCGACCAT
CTCTATCGTGCAAGCTTTCTAGACC
MXO02124.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:09:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG3944-PA | 654 | ND23-RA | 1..651 | 9..659 | 3255 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:10
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ND23-RA | 819 | CG3944-RA | 89..739 | 9..659 | 3255 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:09
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 15836354..15836807 | 501..48 | 2270 | 100 | Minus |
3R | 32079331 | 3R | 15836128..15836288 | 659..499 | 805 | 100 | Minus |
3R | 32079331 | 3R | 15836989..15837029 | 49..9 | 205 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:48:10 has no hits.
MXO02124.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:28 Download gff for
MXO02124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3944-PA | 1..654 | 9..663 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:40 Download gff for
MXO02124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 9..670 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:27 Download gff for
MXO02124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ND23-RA | 89..749 | 9..670 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:27 Download gff for
MXO02124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 15836118..15836286 | 501..670 | 97 | <- | Minus |
3R | 15836355..15836806 | 49..500 | 100 | <- | Minus |
3R | 15836990..15837029 | 9..48 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:40 Download gff for
MXO02124.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 11661840..11662008 | 501..670 | 97 | <- | Minus |
arm_3R | 11662077..11662528 | 49..500 | 100 | <- | Minus |
arm_3R | 11662712..11662751 | 9..48 | 100 | | Minus |