Clone MXO02131 Report

Search the DGRC for MXO02131

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:31
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptspn-F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02131.3prime Sequence

743 bp (714 high quality bases) assembled on 2007-01-19

> MXO02131.3prime
ATGGTCTAGAAAGCTTGCGAAGTCACCCACAGCATGGGAAACGAACTCAA
ACTGGCGCTCAATGCTGTTCTCCGACTCCAGTTCCAGTGCATCGTCGATG
AAGTGCATCTCGACGTGCTCGCGGAACGCATTGAAGGACACTTGGCTGGA
GTACTGCTTGCCGCACATAGGGCAGGTCTTCTCCATTGCGTCGGCTGCAT
CTGCTTTGATTTTCTCTTGTATTATGTTAATTCTCTGGCTGGGCGGCGTG
CCATTGTGTCCATTGTGTTGGCTCTCATAGTTCTTCAGCTCGCTGGTCAG
GCTGTCGTCCGTTTCCAGACTTTTGTCGGCCATCTCCGGTTTTTTGATGG
TTTTCTGGGCACATTCCGGACAGGGCTTGAGTGCTATGCGATTTTCTAGC
AGAGTCATTACCGATCTGAGCTCCTGCTGCTGCTTCATGGCCTCTCGCCT
CAGCTCCTGCAGTCCATCCAAACATCTTTTGGCATCCACATTGGCATCTG
GTTCACTAGTGGTTTCCTCCACCTTTTGCAGGTTGTAGGGGTAACCTAGT
TCCTCACTGCTGGCACCGAAGTCATCCAGGGCTATTTCCTCCAGACTGAG
ATCCTTAATGCCGTCGGAGAGCATCTTTTGGCGAAGGTGAGGATTGGGGG
AGTGCTGCGTAAAGGTCTTGGAGCGCACCAGGTTCTGGTTTTGCTGGGCT
CGCGAGTCTGTTGAGCTGGGCAGTGCGTTCAGCTGCTGATCCT

MXO02131.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:07
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 368..1092 743..19 3625 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:21
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 484..1208 743..19 3625 100 Minus
spn-F-RA 1465 CG12114-RA 484..1208 743..19 3625 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:18
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31256036..31256402 385..19 1835 100 Minus
3R 32079331 3R 31255610..31255969 743..384 1800 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:18:20 has no hits.

MXO02131.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:31 Download gff for MXO02131.3prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 368..1095 16..743 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:22 Download gff for MXO02131.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 484..1208 19..743 100   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:38 Download gff for MXO02131.3prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 484..1208 19..743 100   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:38 Download gff for MXO02131.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255610..31255969 384..743 100 -> Minus
3R 31256038..31256402 19..383 100   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:22 Download gff for MXO02131.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27081332..27081691 384..743 100 -> Minus
arm_3R 27081760..27082124 19..383 100   Minus

MXO02131.5prime Sequence

791 bp (683 high quality bases) assembled on 2007-01-19

> MXO02131.5prime
CAATCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGGCCAGTTCC
ATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAAATGAACTA
CGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCATCCAGCTGC
AGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAAGGGAGGCC
TCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCACTGG
GGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAGG
AGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTC
TGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAACGCACTGCC
CAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGTGCGCTCCA
AGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAAAGATGCTC
TCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATGACTT
CGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGG
AGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTG
GATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAGCAGGAGCT
CAGATCGGTAATGACTCTGCTAGAAGATCGCATAGCACTCAAGCCCCTGT
CGGAATGTGCCCAGAAACCATCAAAAAACCGGAGATGGCCG

MXO02131.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:14
Subject Length Description Subject Range Query Range Score Percent Strand
CG12114-PA 1095 CG12114-RA 1..784 9..791 3780 99.4 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:28
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..900 9..791 3835 99.5 Plus
spn-F-RA 1465 CG12114-RA 117..900 9..791 3835 99.5 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:26
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 9..735 3620 99.9 Plus
3R 32079331 3R 31256036..31256094 734..791 185 91.5 Plus
Blast to na_te.dros performed on 2014-11-28 22:18:27 has no hits.

MXO02131.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:32 Download gff for MXO02131.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-PA 1..784 9..791 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:24 Download gff for MXO02131.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 113..900 1..791 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:43 Download gff for MXO02131.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 113..900 1..791 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:43 Download gff for MXO02131.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255239..31255969 1..735 99 -> Plus
3R 31256038..31256094 736..791 94   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:24 Download gff for MXO02131.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080961..27081691 1..735 99 -> Plus
arm_3R 27081760..27081816 736..791 94   Plus