MXO02132.5prime Sequence
757 bp (494 high quality bases) assembled on 2007-01-19
> MXO02132.5prime
CAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATATCGCGACTT
CTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTCTCGGAGGG
CGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCTGTCGCAGC
CCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCGACATCCAT
GGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGCTTTCCGCC
GGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGGCAAGCAAT
CGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAATACTCGGAG
AATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATTAATCGCAT
ATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAAGTTGTGGA
AGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCATTGTCGAC
GAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTGACCTCCAT
GGAGCACATCCGTCGCATTATGCGGCCAACCGATGTGCCCGACCAGGGAC
TGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCATGGGCTGG
GGCGAACACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAGGTGGTGGC
CAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGCCCATCAAG
TCGTCGA
MXO02132.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5650-PA | 909 | Pp1-87B-RA | 1..749 | 9..757 | 3695 | 99.7 | Plus |
| CG6593-PA | 984 | Pp1alpha-96A-RA | 211..518 | 219..526 | 740 | 89.6 | Plus |
| CG2096-PB | 993 | flw-RB | 260..422 | 265..427 | 340 | 88.3 | Plus |
| CG2096-PA | 1386 | flw-RA | 653..815 | 265..427 | 340 | 88.3 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 172..245 | 180..253 | 270 | 94.5 | Plus |
| CG6593-PA | 984 | Pp1alpha-96A-RA | 577..647 | 585..655 | 255 | 94.3 | Plus |
| CG9156-PA | 909 | Pp1-13C-RA | 283..387 | 291..395 | 200 | 87.6 | Plus |
| CG6593-PA | 984 | Pp1alpha-96A-RA | 115..188 | 123..196 | 195 | 90.5 | Plus |
| CG2096-PB | 993 | flw-RB | 440..534 | 445..539 | 175 | 87.3 | Plus |
| CG2096-PA | 1386 | flw-RA | 833..927 | 445..539 | 175 | 87.3 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:32:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-87B-RA | 2203 | CG5650-RA | 228..978 | 7..757 | 3725 | 99.7 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 402..1129 | 21..748 | 2005 | 85 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 402..1129 | 21..748 | 2005 | 85 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:32:03
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424940..12425690 | 757..7 | 3725 | 99.7 | Minus |
| X | 23542271 | X | 15359589..15360313 | 757..33 | 1810 | 83.3 | Minus |
| 3R | 32079331 | 3R | 24518843..24519192 | 57..406 | 1000 | 85.7 | Plus |
| 3R | 32079331 | 3R | 24519597..24519885 | 408..696 | 860 | 86.5 | Plus |
| X | 23542271 | X | 10406418..10406701 | 123..406 | 775 | 84.9 | Plus |
| X | 23542271 | X | 10406764..10407104 | 408..748 | 565 | 77.7 | Plus |
| Y | 3667352 | Y | 3540059..3540455 | 538..142 | 365 | 72.8 | Minus |
| X | 23542271 | X | 16567440..16567565 | 293..168 | 195 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:32:04 has no hits.
MXO02132.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:32 Download gff for
MXO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5650-PA | 1..748 | 9..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:36:08 Download gff for
MXO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..977 | 1..756 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:25:34 Download gff for
MXO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..977 | 1..756 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:25:34 Download gff for
MXO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12424941..12425693 | 1..756 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:36:08 Download gff for
MXO02132.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8250663..8251415 | 1..756 | 99 | | Minus |
MXO02132.3prime Sequence
197 bp (153 high quality bases) assembled on 2007-01-19
> MXO02132.3prime
ATGGTCTAGAAAGCTTGCCTTTTTACGCTTGTCGGCTGGCTTGAGGATTT
GGAACGAGCACATCAGCGTATCGTCCACGGACATCATGGCGCCGGCATTG
TCGAACTCGCCGCAGTAGTTGGGCGCCGAGAACAGGGTGACCAGCATGCG
TTTGGCAAGAACTCGTACCCATCCTCGACGACTTGATGGGCTCGGCA
MXO02132.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5650-PA | 909 | Pp1-87B-RA | 727..906 | 197..19 | 860 | 99.4 | Minus |
| CG2096-PB | 993 | flw-RB | 794..884 | 134..44 | 230 | 90.1 | Minus |
| CG2096-PA | 1386 | flw-RA | 1187..1277 | 134..44 | 230 | 90.1 | Minus |
| CG6593-PA | 984 | Pp1alpha-96A-RA | 793..875 | 132..50 | 190 | 89.1 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 802..887 | 123..38 | 180 | 88.3 | Minus |
| CG9156-PA | 909 | Pp1-13C-RA | 733..767 | 191..157 | 150 | 97.1 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-87B-RA | 2203 | CG5650-RA | 956..1135 | 197..19 | 875 | 99.4 | Minus |
| Pp1-13C-RA | 1892 | CG9156-RA | 1388..1561 | 191..19 | 455 | 84.5 | Minus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 1125..1288 | 188..26 | 390 | 83.6 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424783..12424962 | 19..197 | 850 | 99.4 | Plus |
| X | 23542271 | X | 15359432..15359605 | 19..191 | 430 | 84.5 | Plus |
| X | 23542271 | X | 10407205..10407299 | 144..50 | 325 | 89.5 | Minus |
| 2R | 25286936 | 2R | 21881560..21881659 | 81..179 | 240 | 85 | Plus |
| 3R | 32079331 | 3R | 24519991..24520082 | 188..98 | 200 | 83.7 | Minus |
| 3R | 32079331 | 3R | 24520345..24520409 | 90..26 | 175 | 84.6 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:28:23 has no hits.
MXO02132.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:32 Download gff for
MXO02132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5650-PA | 728..909 | 15..196 | 98 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:58 Download gff for
MXO02132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 957..1138 | 15..196 | 98 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:04:29 Download gff for
MXO02132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 957..1138 | 15..196 | 98 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:04:29 Download gff for
MXO02132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12424780..12424961 | 15..196 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:58 Download gff for
MXO02132.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8250502..8250683 | 15..196 | 98 | | Plus |
