Clone Sequence Records
MXO02133.3prime Sequence
708 bp (708 high quality bases) assembled on 2007-01-19
> MXO02133.3prime
ATGGTCTAGAAAGCTTGCATATAAATAATCGTGCGGAAAGACGGCGCGTG
CGGGCAGATAGCAAGGATCATGTTGGTTGCGGTAGCGACGCGCCAGGAAA
ACAGCCAGGACCTCAGTGAAGCTGAAGAAGATGCCCAGACCGCCGCACAA
CTTGAAGGCATAGTCGATCTTGTCCTCCAGTAGGGGTCCACATGGTTCGC
AACGGCAGTCCGGCTCGGACGAGTGGGCACAGCACTGTTGATTGATCAGC
TCGCACGAGGGCTCATTGGACGGGGGAACCACGGAAGTTGTGCTCGGTGC
GGTGGCATTGAATCCGCAGCATTTCAGACTATCCTGCACTTGTTTGCGCA
AATCCGTGGGCACCGTCATCCATCCTTGCTCGGCGAACTGCTGCTGCTGT
TCGGAGTTGACGGCCAAGCAGGAACTGGCGATGGAGAACTGGATCAGGAA
CAGCATGAACAGAATGATCATGTAGAAGAAGAGCATCACTTGGTGGTGCT
TGACGGCTCCGGCGAGTCCCAGCATGGATATGCATATGAGGATGACACCG
CAGGCCAGGATCCCGCCCACAATCGGCAGGTTGGTCACTATGGAGGCGGC
ACGCGCGTACACGCCCACTCCAATCAGCAGGAATCCAATCATCACATACA
AAATGTTGAGCGCAATTAGCGCGTTTTTCGAGCAGGTGAAACCGCCGCAC
ATGTCGAC
MXO02133.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6323-PA | 687 | Tsp97E-RA | 1..684 | 702..19 | 3420 | 100 | Minus |
| CG6323-PB | 747 | Tsp97E-RB | 1..591 | 702..112 | 2955 | 100 | Minus |
| CG6323-PB | 747 | Tsp97E-RB | 652..744 | 111..19 | 465 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 703..19 | 3425 | 100 | Minus |
| Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 703..19 | 3425 | 100 | Minus |
| Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 703..19 | 3425 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26963156..26963520 | 110..474 | 1825 | 100 | Plus |
| 3R | 32079331 | 3R | 26964118..26964286 | 475..643 | 845 | 100 | Plus |
| 3R | 32079331 | 3R | 26962359..26962453 | 19..113 | 475 | 100 | Plus |
| 3R | 32079331 | 3R | 26964643..26964703 | 643..703 | 305 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:18 has no hits.
MXO02133.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:33 Download gff for
MXO02133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6323-PA | 1..687 | 16..702 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:45 Download gff for
MXO02133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 109..803 | 15..708 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:31 Download gff for
MXO02133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 109..803 | 15..708 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:31 Download gff for
MXO02133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26962355..26962451 | 15..111 | 97 | <- | Plus |
| 3R | 26963158..26963520 | 112..474 | 100 | <- | Plus |
| 3R | 26964118..26964285 | 475..642 | 100 | <- | Plus |
| 3R | 26964643..26964704 | 643..708 | 93 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:45 Download gff for
MXO02133.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22788077..22788173 | 15..111 | 97 | <- | Plus |
| arm_3R | 22788880..22789242 | 112..474 | 100 | <- | Plus |
| arm_3R | 22789840..22790007 | 475..642 | 100 | <- | Plus |
| arm_3R | 22790365..22790426 | 643..708 | 93 | | Plus |
MXO02133.5prime Sequence
708 bp (708 high quality bases) assembled on 2007-01-19
> MXO02133.5prime
CAGTCGACATGTGCGGCGGTTTCACCTGCTCGAAAAACGCGCTAATTGCG
CTCAACATTTTGTATGTGATGATTGGATTCCTGCTGATTGGAGTGGGCGT
GTACGCGCGTGCCGCCTCCATAGTGACCAACCTGCCGATTGTGGGCGGGA
TCCTGGCCTGCGGTGTCATCCTCATATGCATATCCATGCTGGGACTCGCC
GGAGCCGTCAAGCACCACCAAGTGATGCTCTTCTTCTACATGATCATTCT
GTTCATGCTGTTCCTGATCCAGTTCTCCATCGCCAGTTCCTGCTTGGCCG
TCAACTCCGAACAGCAGCAGCAGTTCGCCGAGCAAGGATGGATGACGGTG
CCCACGGATTTGCGCAAACAAGTGCAGGATAGTCTGAAATGCTGCGGATT
CAATGCCACCGCACCGAGCACAACTTCCGTGGTTCCCCCGTCCAATGAGC
CCTCGTGCGAGCTGATCAATCAACAGTGCTGTGCCCACTCGTCCGAGCCG
GACTGCCGTTGCGAACCATGTGGACCCCTACTGGAGGACAAGATCGACTA
TGCCTTCAAGTTGTGCGGCGGTCTGGGCATCTTCTTCAGCTTCACTGAGG
TCCTGGCTGTTTTCCTGGCGCGTCGCTACCGCAACCAACATGATCCTTGC
TATCTGCCCGCACGCGCCGTCTTTCCGCACGATTATTTATATGCAAGCTT
TCTAGACC
MXO02133.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6323-PA | 687 | Tsp97E-RA | 1..684 | 9..692 | 3420 | 100 | Plus |
| CG6323-PB | 747 | Tsp97E-RB | 1..591 | 9..599 | 2955 | 100 | Plus |
| CG6323-PB | 747 | Tsp97E-RB | 652..744 | 600..692 | 465 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tsp97E-RE | 1757 | CG6323-RE | 115..799 | 8..692 | 3425 | 100 | Plus |
| Tsp97E-RH | 2094 | CG6323-RH | 115..799 | 8..692 | 3425 | 100 | Plus |
| Tsp97E-RA | 1433 | CG6323-RA | 115..799 | 8..692 | 3425 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26963156..26963520 | 601..237 | 1825 | 100 | Minus |
| 3R | 32079331 | 3R | 26964118..26964286 | 236..68 | 845 | 100 | Minus |
| 3R | 32079331 | 3R | 26962359..26962453 | 692..598 | 475 | 100 | Minus |
| 3R | 32079331 | 3R | 26964643..26964703 | 68..8 | 305 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:50:39 has no hits.
MXO02133.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:34 Download gff for
MXO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6323-PA | 1..687 | 9..695 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:09 Download gff for
MXO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 108..803 | 1..696 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:42 Download gff for
MXO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tsp97E-RA | 108..803 | 1..696 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:42 Download gff for
MXO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26964118..26964285 | 69..236 | 100 | <- | Minus |
| 3R | 26964643..26964710 | 1..68 | 94 | | Minus |
| 3R | 26962355..26962451 | 600..696 | 97 | <- | Minus |
| 3R | 26963158..26963520 | 237..599 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:09 Download gff for
MXO02133.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22789840..22790007 | 69..236 | 100 | <- | Minus |
| arm_3R | 22790365..22790432 | 1..68 | 94 | | Minus |
| arm_3R | 22788077..22788173 | 600..696 | 97 | <- | Minus |
| arm_3R | 22788880..22789242 | 237..599 | 100 | <- | Minus |
