Clone MXO02134 Report

Search the DGRC for MXO02134

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:34
Vector:pMK33-CTAP-BD
Associated Gene/TranscriptCG1971-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02134.3prime Sequence

813 bp (695 high quality bases) assembled on 2007-01-19

> MXO02134.3prime
ATGGTCTAGAAAGCTTGCCCGATCGGCCCTTATATCCGCCCCCGATTCGT
TATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTAG
CCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACAG
GAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGAC
GGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAAT
GCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGAG
CTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCTA
GAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTCC
TGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCAA
TAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACGG
CGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGATC
AGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCTG
CATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGACT
GCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAGG
TTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAATT
ACTTAGAAAGACCGGAATTATATTTTCGCTCTCTGATGCTGAATTATTGT
CGGCCATGTCGAC

MXO02134.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:55
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..789 807..19 3920 99.8 Minus
CG1971-PB 639 CG1971-RB 1..636 654..19 3180 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:36
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..915 807..19 3930 99.9 Minus
CG1971-RB 1106 CG1971-RB 103..846 762..19 3720 100 Minus
CG1971-RC 1034 CG1971-RC 54..774 739..19 3605 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:33
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806509 762..19 3720 100 Minus
3R 32079331 3R 31805594..31805637 807..764 220 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:18:34 has no hits.

MXO02134.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:34 Download gff for MXO02134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..792 15..807 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:25 Download gff for MXO02134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 119..918 15..813 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:45 Download gff for MXO02134.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 119..918 15..813 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:45 Download gff for MXO02134.3prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805767..31806512 15..761 99   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:25 Download gff for MXO02134.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631489..27632234 15..761 99   Minus

MXO02134.5prime Sequence

668 bp (667 high quality bases) assembled on 2007-01-19

> MXO02134.5prime
CAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAAATATAATT
CCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGTCAACTCAG
CTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCATTCAGGAGC
ACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGGGCGAT
GTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGGGCCTC
CAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGTGAACG
CCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACCTCACC
GAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGCCAAGT
TCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACTGGAGA
AGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGCCGTCT
CCACAAGGAAGTCAGCTCTTTGGGTGTCCCAATGCCAGCCGCAGCCTGCG
CGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGAGAAAC
TTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCTGCACC
TTGGACGAGTCCTTCCTG

MXO02134.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:03
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-PA 792 CG1971-RA 1..660 9..668 3275 99.8 Plus
CG1971-PB 639 CG1971-RB 1..507 162..668 2510 99.8 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:51
Subject Length Description Subject Range Query Range Score Percent Strand
CG1971-RA 1145 CG1971-RA 127..786 9..668 3285 99.8 Plus
CG1971-RB 1106 CG1971-RB 103..717 54..668 3060 99.8 Plus
CG1971-RC 1034 CG1971-RC 54..645 77..668 2945 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:49
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31805766..31806380 54..668 3060 99.8 Plus
3R 32079331 3R 31805594..31805639 9..54 230 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:50:50 has no hits.

MXO02134.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:34 Download gff for MXO02134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-PA 1..660 9..668 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:15 Download gff for MXO02134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..786 9..668 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:47 Download gff for MXO02134.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1971-RA 127..786 9..668 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:47 Download gff for MXO02134.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31805594..31805639 9..54 100 -> Plus
3R 31805767..31806380 55..668 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:15 Download gff for MXO02134.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27631316..27631361 9..54 100 -> Plus
arm_3R 27631489..27632102 55..668 99   Plus