MXO02134.3prime Sequence
813 bp (695 high quality bases) assembled on 2007-01-19
> MXO02134.3prime
ATGGTCTAGAAAGCTTGCCCGATCGGCCCTTATATCCGCCCCCGATTCGT
TATTGGACCGCTCCGGCTGCTCTACCTCGCTGTCTATGTCCCCCTCGTAG
CCCGAATTTGTTTTCGAGGCAACGGGAAGGGGATTGTGCCCTTTAGACAG
GAAGGACTCGTCCAAGGTGCAGCAGCTACAAAAGCACTCCTTAAAATGAC
GGCAGGTATCCCCAAGTTTCTCGGGGGCCGCCTCTAAGACCTTGTTGAAT
GCTTCGATCTTCTCGCGCAGGCTGCGGCTGGCACTGGGACACCCAAAGAG
CTGACTTCCTTGTGGAGACGGCCGTGAAGATTCGCTGCCAATCTTCTCTA
GAAAGCCGAGAACCTTCTCCAGTGAGTCTCGGGCACGTTTGAAGTTCTCC
TGGCTCTCCCGCAGAACTTGGCTTTCATTGAGGTGCTCAAATTCCACCAA
TAGACCTTGAATCTCGGTGAGGTCAGAAGGCAAACTCATGCCCGCCACGG
CGGAGGTTTGCGGGGCGTTCACAGCATTAACCGTCTCGAAACCCACGATC
AGTCGCTGTATCTTGGAGGCCCCGGCGCGGTGGCCACACCTCGCGAGCTG
CATCATGTCGTTCACATCGCCCACCTCCTTGAGCAACTGCACCGACGACT
GCATTACCTTCTGGTGCTCCTGAATGCCCTGCCGCAAACGGTCTTGCAGG
TTGTGAAGGTATAAGCTGAGTTGACGCACCTGCTCCTTTTCATCGAAATT
ACTTAGAAAGACCGGAATTATATTTTCGCTCTCTGATGCTGAATTATTGT
CGGCCATGTCGAC
MXO02134.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:10:55
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..789 | 807..19 | 3920 | 99.8 | Minus |
CG1971-PB | 639 | CG1971-RB | 1..636 | 654..19 | 3180 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:18:36
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..915 | 807..19 | 3930 | 99.9 | Minus |
CG1971-RB | 1106 | CG1971-RB | 103..846 | 762..19 | 3720 | 100 | Minus |
CG1971-RC | 1034 | CG1971-RC | 54..774 | 739..19 | 3605 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:18:33
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806509 | 762..19 | 3720 | 100 | Minus |
3R | 32079331 | 3R | 31805594..31805637 | 807..764 | 220 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:18:34 has no hits.
MXO02134.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:34 Download gff for
MXO02134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..792 | 15..807 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:25 Download gff for
MXO02134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 119..918 | 15..813 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:04:45 Download gff for
MXO02134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 119..918 | 15..813 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:04:45 Download gff for
MXO02134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805767..31806512 | 15..761 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:25 Download gff for
MXO02134.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631489..27632234 | 15..761 | 99 | | Minus |
MXO02134.5prime Sequence
668 bp (667 high quality bases) assembled on 2007-01-19
> MXO02134.5prime
CAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAAATATAATT
CCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGTCAACTCAG
CTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCATTCAGGAGC
ACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGGGCGAT
GTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGGGCCTC
CAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGTGAACG
CCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACCTCACC
GAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGCCAAGT
TCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACTGGAGA
AGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGCCGTCT
CCACAAGGAAGTCAGCTCTTTGGGTGTCCCAATGCCAGCCGCAGCCTGCG
CGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGAGAAAC
TTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCTGCACC
TTGGACGAGTCCTTCCTG
MXO02134.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-PA | 792 | CG1971-RA | 1..660 | 9..668 | 3275 | 99.8 | Plus |
CG1971-PB | 639 | CG1971-RB | 1..507 | 162..668 | 2510 | 99.8 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:50:51
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1971-RA | 1145 | CG1971-RA | 127..786 | 9..668 | 3285 | 99.8 | Plus |
CG1971-RB | 1106 | CG1971-RB | 103..717 | 54..668 | 3060 | 99.8 | Plus |
CG1971-RC | 1034 | CG1971-RC | 54..645 | 77..668 | 2945 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:50:49
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31805766..31806380 | 54..668 | 3060 | 99.8 | Plus |
3R | 32079331 | 3R | 31805594..31805639 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:50:50 has no hits.
MXO02134.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:34 Download gff for
MXO02134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-PA | 1..660 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:15 Download gff for
MXO02134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..786 | 9..668 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:47 Download gff for
MXO02134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1971-RA | 127..786 | 9..668 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:47 Download gff for
MXO02134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31805594..31805639 | 9..54 | 100 | -> | Plus |
3R | 31805767..31806380 | 55..668 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:15 Download gff for
MXO02134.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27631316..27631361 | 9..54 | 100 | -> | Plus |
arm_3R | 27631489..27632102 | 55..668 | 99 | | Plus |