Clone Sequence Records
MXO02135.3prime Sequence
753 bp (736 high quality bases) assembled on 2007-01-19
> MXO02135.3prime
ATGGTCTAGAAAGCTTGCCCAGAGGCGGTGCAGGTGCAAGTTCCTCGACA
GCACCGATCTCACGTCGTTCGTGAACCTCAGCGCATCCAGCATGGGCAGC
AGCGACAGCAGCGCCGTGTCCATCGGGTCCGAGAACCAACTCTTGATGGG
TATGGCGTTGTTGGGAAAACAGCGATAGGCGCCGGGCGAATTGTCGATGA
TAAATATCCTATTTAGGTCACTGCAGATGGCCGACAGGTCTTTGGTGTAG
GATCCGTAGTCGGGCGTGCAGTGCTGTCTGTAGTATCGCCTCCGGAGGAT
GTTTCGTCCGTTGTCCAGCTTGTCTGCCACCGCCGCTCCGTAAATCTCCA
TGCTGGCCGTGAAGACCACCAGATCGTACCACTGCGAGACCACGTCCAGG
AAGTAGTCCACATGCGGTCGCTTGTGCACGAAAAAGCGCACTGGATTCCG
ATCGATGGTCACTTTGACAGTGAAATCGTGCGGCGTGCCCGGCTTCACCG
TATTCCGGGGCATCGCATTGTGATGGGAGTGGATTAGCGTTTCGTCCAGG
TCCAGAACGAGGGTCTTGCGCTGCACCAGGCTCAGGCGGTGCCGCGAGAC
GGGTGACAACGGGAAGAGTTCGTATTTAACCGGTTGATACTGGATAAAAG
CTCGCACTTGGCGATTGAACATGAAACAAATGCATGTCCATACTTTTGAT
AGCAACAACAAAAGCGCACGGAATTTCATTTGCAGCAGCGAAATCATGTC
GAC
MXO02135.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:11
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1696-PA | 732 | l(1)G0269-RA | 1..729 | 747..19 | 3645 | 100 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:29
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 3043 | CG1696-RA | 781..1509 | 747..19 | 3645 | 100 | Minus |
Dd-RB | 3034 | CG1696-RB | 781..1500 | 747..19 | 3500 | 98.8 | Minus |
Dd-RC | 2860 | CG1696-RC | 781..1137 | 747..391 | 1785 | 100 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:27
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21321903..21322162 | 389..648 | 1300 | 100 | Plus |
X | 23542271 | X | 21321325..21321514 | 19..208 | 950 | 100 | Plus |
X | 23542271 | X | 21321637..21321820 | 208..391 | 920 | 100 | Plus |
X | 23542271 | X | 21323131..21323229 | 649..747 | 495 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 21:48:28 has no hits.
MXO02135.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:35 Download gff for
MXO02135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 18..747 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:50 Download gff for
MXO02135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 776..1513 | 13..753 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:35 Download gff for
MXO02135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 776..1513 | 13..753 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:35 Download gff for
MXO02135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21321321..21321513 | 13..207 | 98 | <- | Plus |
X | 21321637..21321819 | 208..390 | 100 | <- | Plus |
X | 21321905..21322162 | 391..648 | 100 | <- | Plus |
X | 21323131..21323233 | 649..753 | 97 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:50 Download gff for
MXO02135.3prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21192348..21192540 | 13..207 | 98 | <- | Plus |
arm_X | 21192664..21192846 | 208..390 | 100 | <- | Plus |
arm_X | 21192932..21193189 | 391..648 | 100 | <- | Plus |
arm_X | 21194158..21194260 | 649..753 | 97 | | Plus |
MXO02135.5prime Sequence
753 bp (707 high quality bases) assembled on 2007-01-19
> MXO02135.5prime
CAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGCTTTTGTTG
TTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAATCGCCAAGT
GCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTTCCCGTTGT
CACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGACCCTCGTT
CTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCGATGCCCCG
GAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAAAGTGACCA
TCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGCATGTGGAC
TACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTCTTCACGGC
CAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGACAACGGAC
GAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGCCCGACTAC
GGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTAAATAGGAT
ATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCCCAACAACG
CCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGGCGCTGCTG
TCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGACGTGAGATC
GGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAGCTTTCTAG
ACC
MXO02135.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:21
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
CG1696-PA | 732 | l(1)G0269-RA | 1..729 | 9..737 | 3645 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:03
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
Dd-RA | 3043 | CG1696-RA | 781..1509 | 9..737 | 3645 | 100 | Plus |
Dd-RB | 3034 | CG1696-RB | 781..1500 | 9..737 | 3500 | 98.8 | Plus |
Dd-RC | 2860 | CG1696-RC | 781..1137 | 9..365 | 1785 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:01
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 21321903..21322162 | 367..108 | 1300 | 100 | Minus |
X | 23542271 | X | 21321325..21321514 | 737..548 | 950 | 100 | Minus |
X | 23542271 | X | 21321637..21321820 | 548..365 | 920 | 100 | Minus |
X | 23542271 | X | 21323131..21323229 | 107..9 | 495 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:02 has no hits.
MXO02135.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:35 Download gff for
MXO02135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG1696-PA | 1..732 | 9..738 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:21 Download gff for
MXO02135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 4..743 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:53 Download gff for
MXO02135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
Dd-RA | 777..1513 | 4..743 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:53 Download gff for
MXO02135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 21321905..21322162 | 108..365 | 100 | <- | Minus |
X | 21323131..21323233 | 4..107 | 98 | | Minus |
X | 21321637..21321819 | 366..548 | 100 | <- | Minus |
X | 21321321..21321513 | 549..743 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:21 Download gff for
MXO02135.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 21194158..21194260 | 4..107 | 98 | | Minus |
arm_X | 21192348..21192540 | 549..743 | 98 | <- | Minus |
arm_X | 21192664..21192846 | 366..548 | 100 | <- | Minus |
arm_X | 21192932..21193189 | 108..365 | 100 | <- | Minus |