Clone MXO02135 Report

Search the DGRC for MXO02135

Clone and Library Details

Library:MXO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus TAP tag for tissue culture
Original Plate Number:21
Well:35
Vector:pMK33-CTAP-BD
Associated Gene/Transcriptl(1)G0269-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

MXO02135.3prime Sequence

753 bp (736 high quality bases) assembled on 2007-01-19

> MXO02135.3prime
ATGGTCTAGAAAGCTTGCCCAGAGGCGGTGCAGGTGCAAGTTCCTCGACA
GCACCGATCTCACGTCGTTCGTGAACCTCAGCGCATCCAGCATGGGCAGC
AGCGACAGCAGCGCCGTGTCCATCGGGTCCGAGAACCAACTCTTGATGGG
TATGGCGTTGTTGGGAAAACAGCGATAGGCGCCGGGCGAATTGTCGATGA
TAAATATCCTATTTAGGTCACTGCAGATGGCCGACAGGTCTTTGGTGTAG
GATCCGTAGTCGGGCGTGCAGTGCTGTCTGTAGTATCGCCTCCGGAGGAT
GTTTCGTCCGTTGTCCAGCTTGTCTGCCACCGCCGCTCCGTAAATCTCCA
TGCTGGCCGTGAAGACCACCAGATCGTACCACTGCGAGACCACGTCCAGG
AAGTAGTCCACATGCGGTCGCTTGTGCACGAAAAAGCGCACTGGATTCCG
ATCGATGGTCACTTTGACAGTGAAATCGTGCGGCGTGCCCGGCTTCACCG
TATTCCGGGGCATCGCATTGTGATGGGAGTGGATTAGCGTTTCGTCCAGG
TCCAGAACGAGGGTCTTGCGCTGCACCAGGCTCAGGCGGTGCCGCGAGAC
GGGTGACAACGGGAAGAGTTCGTATTTAACCGGTTGATACTGGATAAAAG
CTCGCACTTGGCGATTGAACATGAAACAAATGCATGTCCATACTTTTGAT
AGCAACAACAAAAGCGCACGGAATTTCATTTGCAGCAGCGAAATCATGTC
GAC

MXO02135.3prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:11
Subject Length Description Subject Range Query Range Score Percent Strand
CG1696-PA 732 l(1)G0269-RA 1..729 747..19 3645 100 Minus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:48:29
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 3043 CG1696-RA 781..1509 747..19 3645 100 Minus
Dd-RB 3034 CG1696-RB 781..1500 747..19 3500 98.8 Minus
Dd-RC 2860 CG1696-RC 781..1137 747..391 1785 100 Minus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:48:27
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21321903..21322162 389..648 1300 100 Plus
X 23542271 X 21321325..21321514 19..208 950 100 Plus
X 23542271 X 21321637..21321820 208..391 920 100 Plus
X 23542271 X 21323131..21323229 649..747 495 100 Plus
Blast to na_te.dros performed on 2014-11-28 21:48:28 has no hits.

MXO02135.3prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:35 Download gff for MXO02135.3prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 18..747 99   Minus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:50 Download gff for MXO02135.3prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 776..1513 13..753 99   Minus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:35 Download gff for MXO02135.3prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 776..1513 13..753 99   Minus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:35 Download gff for MXO02135.3prime
Subject Subject Range Query Range Percent Splice Strand
X 21321321..21321513 13..207 98 <- Plus
X 21321637..21321819 208..390 100 <- Plus
X 21321905..21322162 391..648 100 <- Plus
X 21323131..21323233 649..753 97   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:50 Download gff for MXO02135.3prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21192348..21192540 13..207 98 <- Plus
arm_X 21192664..21192846 208..390 100 <- Plus
arm_X 21192932..21193189 391..648 100 <- Plus
arm_X 21194158..21194260 649..753 97   Plus

MXO02135.5prime Sequence

753 bp (707 high quality bases) assembled on 2007-01-19

> MXO02135.5prime
CAGTCGACATGATTTCGCTGCTGCAAATGAAATTCCGTGCGCTTTTGTTG
TTGCTATCAAAAGTATGGACATGCATTTGTTTCATGTTCAATCGCCAAGT
GCGAGCTTTTATCCAGTATCAACCGGTTAAATACGAACTCTTCCCGTTGT
CACCCGTCTCGCGGCACCGCCTGAGCCTGGTGCAGCGCAAGACCCTCGTT
CTGGACCTGGACGAAACGCTAATCCACTCCCATCACAATGCGATGCCCCG
GAATACGGTGAAGCCGGGCACGCCGCACGATTTCACTGTCAAAGTGACCA
TCGATCGGAATCCAGTGCGCTTTTTCGTGCACAAGCGACCGCATGTGGAC
TACTTCCTGGACGTGGTCTCGCAGTGGTACGATCTGGTGGTCTTCACGGC
CAGCATGGAGATTTACGGAGCGGCGGTGGCAGACAAGCTGGACAACGGAC
GAAACATCCTCCGGAGGCGATACTACAGACAGCACTGCACGCCCGACTAC
GGATCCTACACCAAAGACCTGTCGGCCATCTGCAGTGACCTAAATAGGAT
ATTTATCATCGACAATTCGCCCGGCGCCTATCGCTGTTTTCCCAACAACG
CCATACCCATCAAGAGTTGGTTCTCGGACCCGATGGACACGGCGCTGCTG
TCGCTGCTGCCCATGCTGGATGCGCTGAGGTTCACGAACGACGTGAGATC
GGTGCTGTCGAGGAACTTGCACCTGCACCGCCTCTGGGCAAGCTTTCTAG
ACC

MXO02135.5prime Blast Records

Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:21
Subject Length Description Subject Range Query Range Score Percent Strand
CG1696-PA 732 l(1)G0269-RA 1..729 9..737 3645 100 Plus
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:03
Subject Length Description Subject Range Query Range Score Percent Strand
Dd-RA 3043 CG1696-RA 781..1509 9..737 3645 100 Plus
Dd-RB 3034 CG1696-RB 781..1500 9..737 3500 98.8 Plus
Dd-RC 2860 CG1696-RC 781..1137 9..365 1785 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:01
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 21321903..21322162 367..108 1300 100 Minus
X 23542271 X 21321325..21321514 737..548 950 100 Minus
X 23542271 X 21321637..21321820 548..365 920 100 Minus
X 23542271 X 21323131..21323229 107..9 495 100 Minus
Blast to na_te.dros performed on 2014-11-28 19:51:02 has no hits.

MXO02135.5prime Sim4 Records

Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:35 Download gff for MXO02135.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1696-PA 1..732 9..738 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:21 Download gff for MXO02135.5prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 4..743 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:53 Download gff for MXO02135.5prime
Subject Subject Range Query Range Percent Splice Strand
Dd-RA 777..1513 4..743 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:53 Download gff for MXO02135.5prime
Subject Subject Range Query Range Percent Splice Strand
X 21321905..21322162 108..365 100 <- Minus
X 21323131..21323233 4..107 98   Minus
X 21321637..21321819 366..548 100 <- Minus
X 21321321..21321513 549..743 98 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:21 Download gff for MXO02135.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 21194158..21194260 4..107 98   Minus
arm_X 21192348..21192540 549..743 98 <- Minus
arm_X 21192664..21192846 366..548 100 <- Minus
arm_X 21192932..21193189 108..365 100 <- Minus