MXO02136.5prime Sequence
806 bp (752 high quality bases) assembled on 2007-01-19
> MXO02136.5prime
CAGTCGACATGTTTTCGCACAAGTTTATTTGCGGGTCCTTGACCAAAATG
ACTGAAACCGGCATTACATTCGATCCGCCGGTGTACGAGCAGCGATATTG
CGCCACAATCCAAATTCTGGAGGACGCCCGCTGGAAGGATCAGATTAAGA
AGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTCTTCCAGCTAATGCGT
CGCATTGAGACCATAGAACATATTGGACTGGTGGACATCGACAAGTCCTT
GCTCATGAGAAACTTAACCAGCGTTAATCCACTGGTTTCCGATTATATAC
GGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTGCAGGGGAATGTGGCT
GATTCTTCGGAAGAATTGAGGGACACTGACGCTGTAATCGCAATTGAACT
AATCGAGCACGTTTACGACGATGTATTGGCCAAAATTCCAGTCAACATTT
TTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGCACACCAAACTCGGAC
TTCAACGTTATATTTACGCGGTTCAATCCGCTGTTGCCAAATGGTTTTCG
CCACGAGGATCACAAGTTCGAGTGGTCACGCGATGAGTTCAAGAACTGGT
GTTTGGGCATTGTGGAGAAGTACCCGAATTATATGTTTTCCCTAACGGGA
GTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGGCCCCGTTTCACAGAT
AGCCATATTCGTTCGCAAGGATATGCTGGAGATGCAGTTGGTTAACCCGT
TGGTTAGCAAACCCAATATCGATAAGGAATCAATTCCCTACAAGCTAATT
CATACC
MXO02136.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG12367-PA | 1176 | CG12367-RA | 1..798 | 9..806 | 3990 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:27:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1573 | CG12367-RA | 51..848 | 9..806 | 3990 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:27:51
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12151622..12152027 | 401..806 | 2030 | 100 | Plus |
| 2R | 25286936 | 2R | 12145760..12145983 | 9..232 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 12151362..12151532 | 230..400 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:27:52 has no hits.
MXO02136.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:36 Download gff for
MXO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-PA | 1..798 | 9..806 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:03:53 Download gff for
MXO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 45..848 | 1..806 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:59:50 Download gff for
MXO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 45..848 | 1..806 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:59:50 Download gff for
MXO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12145754..12145981 | 1..230 | 98 | -> | Plus |
| 2R | 12151363..12151532 | 231..400 | 100 | -> | Plus |
| 2R | 12151622..12152027 | 401..806 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:03:53 Download gff for
MXO02136.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8033259..8033486 | 1..230 | 98 | -> | Plus |
| arm_2R | 8038868..8039037 | 231..400 | 100 | -> | Plus |
| arm_2R | 8039127..8039532 | 401..806 | 100 | | Plus |
