Clone Sequence Records
MXO02139.3prime Sequence
860 bp (782 high quality bases) assembled on 2007-01-19
> MXO02139.3prime
ATGGTCTAGAAAGCTTGCGTTCAGTTTCTTCTCTTCCTTGAGCTCCTTGA
GTCGATTCAGGCGCTGGAGAAGAGTCGGATGTGAGTGGTTCCAAGTCGAG
TACAGCCAATCGTAAACGGGGAAGCCAAGGTTGTCAACGTTCAGTTTTAT
GAGGGCCTGACCCAACTGCTCAGCGAATCCCAACTTGAAAGCGAACTCAT
CAGCCTGATACTCGAATCGTCGCGACAAAATTGTCATGGCGAAGTTCATG
AGGGCATTGTATGGCGCGAGTACGTAGGTAAAGACGATTAGCAAACCGAC
GAGAATGGGCCGAGTACCAGGTTGGAATCCCATGGCCACGTAGAATGGTG
GATACTTGAAGACATTTCCAAAGACCAGGAACATCAGAAAGAGATGAACC
TGCATGATAATAATGTTCTTGGTAACGTGTCCCAGTTTCCAGTGTCCCAG
CTCGTGTCCCAAAACAGCCAGCACCTCCTCGTCGGTGCAACCCTTTCCCT
TTTCTTCCTCTGACAACTCGGAGTCGTCCGGTTTACCTTTGTTTAGCAGC
AGCGTGTCGAATAGCACGATCCTCTTCGAGTTCCAGAGGCCATAGAAGTA
GGCATTGCTGTGCGAGGAGCGCTTGGATCCCTCCACCACGAAAAGCTTAG
TGAGCGGGAACTTGAGCGATGCGGCCAGATCCTCAATCGATTGCCTCAGA
GCACCCTTCTCCAGCGGAGTATACTTGTCGAACAGGGGAGCAATGAAAAT
CGGATACAAAGTGAGTAGAAACAGCGAGATAACGCCTGTGAAGATCCACA
GCCATATGAAAAAGTTGTCGCCGCCGCGTTGCACGATGAAGATAATAGCC
GCTGTGATGG
MXO02139.3prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:11:53
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 512..1353 | 860..19 | 4185 | 99.8 | Minus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:44:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 591..1432 | 860..19 | 4195 | 99.9 | Minus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:44:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000359..17001200 | 19..860 | 4195 | 99.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:44:33 has no hits.
MXO02139.3prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:36 Download gff for
MXO02139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 512..1356 | 15..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:39:37 Download gff for
MXO02139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 591..1436 | 14..860 | 99 | | Minus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:25:35 Download gff for
MXO02139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 591..1436 | 14..860 | 99 | | Minus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:25:35 Download gff for
MXO02139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000355..17001200 | 14..860 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:39:37 Download gff for
MXO02139.3prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12887860..12888705 | 14..860 | 99 | | Plus |
MXO02139.5prime Sequence
836 bp (779 high quality bases) assembled on 2007-01-19
> MXO02139.5prime
CAGTCGACATGTCATCATTGGACGCAGACACCGTGCTGCTGAGCATTTTG
TTCCTCGTAGTCATCGAGAATGCGCTAGAGATCTATATATCGCTGCGCCA
GGTGAAAGTGTACCAAACTGCACTGAAGGTACCGGCCGAACTGAAGTCAC
ACATGGGCGAGGATACGTTCCATAAGGCGCGGAAATATGGTCTGGACCAG
GAGAAATTCGGCATCTTCAAAGCTGTTGTTATGGATGTGGCCCTGCTTTG
CATGGAGCTGTACATCGGACTGATCGCTGTGCTCTGGCAGCTGTCCGTCC
AGGTGGTGGATAAACTGCAATGGGACTCCAAAAACGAGATCATCGTCAGC
TGCGTTTTTGTGCTCATATCGAATGTATTGAGCACTTTCAAGGGACTGCC
CTTCAAGATCTACAAGATATTCGTGCTGGAGGAGACGCATGGCTTTAACA
AACAAACAGCGAGATTCTTCGCCTGGGATCAGCTCAAAGGCTTCCTAGTC
ACCCAGGTCCTCATGATTCCCATCACAGCGGCTATTATCTTCATCGTGCA
ACGCGGCGGCGACAACTTTTTCATATGGCTGTGGATCTTCACAGGCGTTA
TCTCGCTGGTTCTACTCACTTTGTATCCGATTTTCATTGCTCCCCTGTTC
GACAAGTATACTCCGCTGGAGAAGGGTGCTCTGAGGCAATCGATTGAGGA
TCTGGCCGCATCGCTCAAGTTCCCGCTCACTAAGCTTTTCGTGGTGGAGG
GATCCAAGCGCTCCTCGCACAGCAATGCCTACTTCTATGGCCTCTGGAAC
TCGAAGAGGATCGTGCTATTCGACACGCTGCTGCTA
MXO02139.5prime Blast Records
Blast to dmel-all-CDS-r5.1.fasta performed 2007-05-10 05:12:01
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG9000-PA | 1356 | CG9000-RA | 1..828 | 9..836 | 4140 | 100 | Plus |
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:51:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| ste24a-RA | 1547 | CG9000-RA | 80..907 | 9..836 | 4140 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:51:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 17000884..17001622 | 836..98 | 3695 | 100 | Minus |
| 2R | 25286936 | 2R | 17001768..17001862 | 103..9 | 475 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:51:13 has no hits.
MXO02139.5prime Sim4 Records
Sim4 to dmel-all-CDS-r5.1.fasta performed 2007-05-11 19:17:37 Download gff for
MXO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9000-PA | 1..827 | 9..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:26 Download gff for
MXO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..906 | 9..835 | 100 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:28:59 Download gff for
MXO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| ste24a-RA | 80..906 | 9..835 | 100 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:28:59 Download gff for
MXO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 17000885..17001618 | 102..835 | 100 | <- | Minus |
| 2R | 17001770..17001862 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:26 Download gff for
MXO02139.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 12888390..12889123 | 102..835 | 100 | <- | Minus |
| arm_2R | 12889275..12889367 | 9..101 | 100 | | Minus |
